SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene114

Length: 339 nt

UniGene Fasta

>biog3_v1.0_unigene114
CTCGCAGGTGCCCAGATGTCAAGCAGAGGGTTGCAAGGCGGATTTGAGCACTGCGAAACACTATCACCGTCGCCATAAGGTCTGTGAATTGCACTCCAAGGCAGCCACGGTCGTCAGTGGTGGACTCACTCAGAGGTTTTGCCAGCAATGCAGCAGGTTCCACGTCTTGTCTGAGTTTGATGAGGGCAAACGGAGCTGCAGAAAACGCCTTGCAGATCACAATAGACGCAGAAGAAAACCTCAACCCAATGCAGTTGTTACAGTCTCAAATACTGAATCATCTTCTGCGCTCAAGACCACTGATCAAGATCAAGATACCAACAGCGGAAGCAATCAGTC

Ace file of the UniGene biog3_v1.0_unigene114

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene2457	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	Predicted protein n=2 Tax=Physcomitrella patens RepID=A9TKM8_PHYPA	-	-	40%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	66%
Blast2go	protein	-	-	63%

Source	GOs	Term	Type	Identity
Blast2go	microsporogenesis	GO:0009556	Biological Process	63%
Blast2go	megasporogenesis	GO:0009554	Biological Process	63%
Blast2go	anther development	GO:0048653	Biological Process	63%
Blast2go	DNA binding	GO:0003677	Molecular Function	63%
Blast2go	nucleus	GO:0005634	Cellular Component	63%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase aspartic, active site	IPR001969	-	-
Sma3	Ankyrin repeat	IPR002110	-	-
Sma3	Transcription factor, SBP-box	IPR004333	-	-
Sma3	Zinc ribbon, NADH pyrophosphatase	IPR015376	-	-
Sma3	Squamosa promoter-binding protein	IPR017238	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3	Tubulin, conserved site	IPR017975	-	-

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NSA8

Fln msg: STOP codon was not found. Distance to subject end: 15 aas, your sequence is shorter than subject: 112 - 198

Fln protein: SQVPRCQAEGCKADLSTAKHYHRRHKVCELHSKAATVVSGGLTQRFCQQCSRFHVLSEFDEGKRSCRKRLADHNRRRRKPQPNAVVTVSNTESSSALKTTDQDQDTNSGSNQ

Protein Length: 113

Fln nts: CTCGCAGGTGCCCAGATGTCAAGCAGAGGGTTGCAAGGCGGATTTGAGCACTGCGAAACACTATCACCGTCGCCATAAGGTCTGTGAATTGCACTCCAAGGCAGCCACGGTCGTCAGTGGTGGACTCACTCAGAGGTTTTGCCAGCAATGCAGCAGGTTCCACGTCTTGTCTGAGTTTGATGAGGGCAAACGGAGCTGCAGAAAACGCCTTGCAGATCACAATAGACGCAGAAGAAAACCTCAACCCAATGCAGTTGTTACAGTCTCAAATACTGAATCATCTTCTGCGCTCAAGACCACTGATCAAGATCAAGATACCAACAGCGGAAGCAATCAGTC

Fln Alignment:

Contig114___SQVPRCQAEGCKADLSTAKHYHRRHKVCELHSKAATVVSGGLTQRFCQQCSRFHVLSEFDEGKRSCRKRLADHNRRRRKPQPNAVV
A9NSA8________________AQPPACQVEKCAADLADAKEYYRRHRVCEQHSKARVVLVLGLQQRFCQQCSRFHVLEEFDEAKRSCRRRLAGHNERRRKTPSDSSV

SNPs (tot: 3)

Position	A %	G %	T %	Probability
156	33	66		0.997452
157		66	33	0.997452
158		33	66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain