SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene106

Length: 1428 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene106

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene16224	104/106

Source	Descriptions	Term	Type	Identity
AutoFact	ATP synthase subunit beta, mitochondrial n=4 Tax=Nicotiana RepID=ATPBM_NICPL	-	-	84%
FL-Next	sp=ATP synthase subunit beta; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	99%
Blast2go	atp synthase beta chain	-	-	89%

Source	GOs	Term	Type	Identity
Blast2go	ATP synthesis coupled proton transport	GO:0015986	Biological Process	89%
Blast2go	transmembrane transporter activity	GO:0022857	Molecular Function	89%
Blast2go	proton-transporting two-sector ATPase complex, catalytic domain	GO:0033178	Cellular Component	89%
Blast2go	mitochondrion	GO:0005739	Cellular Component	89%

Source	InterPros	Term	Type	Identity
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	ATPase, F1 complex, beta subunit	IPR005722	-	-
Sma3	ATPase, F1/V1/A1 complex, alpha/beta subunit, C-terminal	IPR000793	-	-
Sma3	ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal	IPR004100	-	-
Sma3	ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain	IPR000194	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NUR7

Fln msg: your sequence is shorter than subject: 344 - 568

Fln protein: DLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGEKQGESKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQERITTTKKGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRQISELGIYPAVDPLDSTSRMLSPHILGEDHYNTARGVQKVLQNYKNLQDIIAILGMDELSEDDKLTVSRARKIQRFLSQPFHVAEVFTGAPGKYVDLKESIASFQGVLDGKYDDLPEQSFYMVGGIDEVTAKAEKITKDSAVPS*

Protein Length: 345

Fln nts: GACCTTCTTGCACCATATCAACGTGGAGGAAAGATTGGGCTTTTTGGTGGAGCTGGTGTTGGAAAAACTGTTCTTATCATGGAACTGATCAACAATGTTGCCAAGGCTCATGGTGGTTTCTCTGTATTTGCTGGTGTTGGAGAGCGTACTAGAGAAGGCAATGATTTATACAGGGAAATGATTGAGAGTGGTGTTATCAAGCTTGGCGAAAAACAGGGTGAAAGCAAGTGTGCTCTTGTATATGGTCAAATGAATGAACCACCTGGTGCTCGTGCTCGTGTTGGGCTTACAGGATTGACTGTTGCAGAGCATTTTCGAGATGCCGAAGGCCAGGATGTGTTGCTCTTCATTGACAACATTTTCCGTTTTACACAAGCAAACTCTGAAGTGTCTGCTTTGCTGGGACGTATCCCTTCAGCTGTCGGATACCAGCCAACTTTGGCTACTGATCTTGGAGGTTTGCAGGAACGTATTACAACAACCAAGAAGGGTTCCATTACTTCCGTGCAAGCTATATATGTGCCAGCTGATGATTTGACAGATCCAGCACCTGCAACAACATTCGCCCATCTTGATGCCACCACTGTGTTATCTAGGCAGATCTCAGAGCTTGGTATATACCCAGCCGTTGACCCACTGGATTCTACATCCCGCATGCTTTCTCCTCACATTCTAGGAGAAGACCACTATAATACTGCTCGAGGTGTACAGAAGGTCCTTCAGAACTACAAGAACCTTCAGGATATTATTGCAATTTTAGGTATGGATGAACTGAGTGAAGATGATAAACTGACTGTGTCCCGGGCCAGAAAGATTCAGCGATTCTTGAGTCAGCCCTTCCATGTGGCTGAAGTTTTCACGGGCGCTCCAGGAAAATATGTTGACCTGAAAGAGAGCATTGCTAGCTTCCAGGGTGTTTTAGATGGTAAATATGATGATCTTCCTGAGCAGTCGTTTTATATGGTTGGAGGTATTGATGAAGTGACAGCAAAGGCAGAGAAAATCACCAAGGATTCAGCAGTACCATCATAA___GTTACTGCGTTTTGGCACTCTTTGTTGGTTATGGTTTGCCTATTGGGCGTTAGATTCACTTTTATTGGGTTTTAGGTCATGACTGCCTTGAGGACCATGTTTATCAATTATCAAAACCTCAAATTTTGCTGATTGTGGACTATTTATTGTCCATTGATTTCTTATTCAGCCACGGCTGTTCTACGGATTATTCCAAAAGTGCTTGTGGAAGAGATCTAAGAGCGTTTGCAGATCTCTTCTGCTCTTTTTATTCAATTCCCAAATAAGGATGCATGCAATTTTTTGCATTACATTTTGTGGATTTTTTCAATCTGTCCATTGAATGATTTAGAATGTTTTGAAGAGGCAGTTTTGATATAATAAATCAGAGAGATTCGAGAAAATATAGCCAACATT

Fln Alignment:

Contig106___DLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGEKQGESKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQERITTTKKGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRQISELGIYPAVDPLDSTSRMLSPHILGEDHYNTARGVQKVLQNYKNLQDIIAILGMDELSEDDKLTVSRARKIQRFLSQPFHVAEVFTGAPGKYVDLKESIASFQGVLDGKYDDLPEQSFYMVGGIDEVTAKAEKITKDSAVPS
A9NUR7________________DLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGEKQGESKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQERITTTKKGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRQISELGIYPAVDPLDSTSRMLSPHILGEDHYNTARGVQKVLQNYKNLQDIIAILGMDELSEDDKLTVSRARKIQRFLSQPFHVAEVFTGAPGKYVDLKESIASFQGVLDGKYDDLPEQSFYMVGGIDEVTAKAEKITRESAVAS

SNPs (tot: 23)

Position	A %	C %	G %	T %	Probability
67		20		20	0.99255
68	60		40		1.0
69	60	20		20	0.99255
71		80	20		0.995493
72	20			80	0.995493
75	20			80	0.995493
77		20		80	0.995493
78			20	80	0.995493
79	80		20		0.995493
80			20	80	0.995493
189			88	11	0.923564
299	11			88	0.923564
300		11	88		0.923564
302		88		11	0.923564
359	80			20	0.995493
360		80		20	0.995493
1297	87	12			0.992554
1300	87			12	0.992554
1330	16			83	0.994512
1331		16		83	0.994512
1332	16		83		0.994512
1334			83	16	0.994512
1404		75		25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain