SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene105

Length: 667 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene105

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene26935	13/13

Source	Descriptions	Term	Type	Identity
AutoFact	NADPH--cytochrome P450 reductase n=1 Tax=Pseudotsuga menziesii RepID=Q40916_PSEMZ	-	-	85%
FL-Next	sp=NADPH--cytochrome P450 reductase; Pseudotsuga menziesii (Douglas-fir) (Abies menziesii).	-	-	88%
Blast2go	nadph--cytochrome p450 reductase-like	-	-	85%

Source	InterPros	Term	Type	Identity
Sma3	FAD-binding, type 1	IPR003097	-	-
Sma3	Ferredoxin reductase-type FAD-binding domain	IPR017927	-	-
Sma3	Flavodoxin	IPR001094	-	-
Sma3	Flavodoxin/nitric oxide synthase	IPR008254	-	-
Sma3	Flavoprotein pyridine nucleotide cytochrome reductase	IPR001709	-	-
Sma3		IPR015702	-	-
Sma3	Oxidoreductase FAD/NAD(P)-binding	IPR001433	-	-

Full-Lengther Next Prediction

SNPs (tot: 20)

Position	A %	C %	G %	T %	Probability
174	66			33	0.997452
221	25		75		0.996473
224	75		25		0.996473
291	16			83	0.994512
292	16	83			0.994512
293			83	16	0.994512
295		83		16	0.994512
346	14			85	0.993533
347	14		85		0.993533
348			85	14	0.993533
349		85	14		0.993533
350		85		14	0.993533
360		14	85		0.993533
361	14		85		0.993533
471	11		88		0.923564
472		11	88		0.923564
474	88			11	0.923564
475	88			11	0.923564
623	20			80	0.995493
642		33	66		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain