SustainPineDB

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Assembly info
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Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene103

Length: 412 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene103
AATGTCATCTCACCTGCTTATCACTATTCTCCGCCGCTGCATTCTGAACATTCAGCCATGAGAAAGAATGTGTCTGCTGAGCATTCTTTTGTGACCGGTAATGGAAAACAGGAAACTGAAAATGGCGACTCTGCTGAAAGTGAGGAGGTAAGCTCACAAATTAATAACCGAACTGATAAAAACAAACAAATGGCTTCGTGCATATAATTGGTTTGACTACAAAAGCAGTTCTAATAGTTGGAAGTGTAATTTCAGTCCTCACCTTAGCTAGCTTTGAGCCCAAACTTCGTAGAAGTGTTCCTTCTTTAAAACTGTCAGAGCTATTGCCCCGGCGGATGAATATTCCTTCAATACAATCAAAGGCAGATGTTCCCAACCAGTGTCCTCCTGGGAAAGTATTATTAATTACATT

Ace file of the UniGene biog3_v1.0_unigene103 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene2560	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	Unassigned protein	-	-	-
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	74%
Blast2go	protein	-	-	55%

Source	GOs	Term	Type	Identity
Blast2go	plastid fission	GO:0043572	Biological Process	55%
Blast2go	protein binding	GO:0005515	Molecular Function	55%
Blast2go	integral to chloroplast outer membrane	GO:0031359	Cellular Component	55%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5ADQ6

Fln msg: Overlapping hits, possible frame ERROR between 180 and 180, Distance to subject end: 29 aas, your sequence is shorter than subject: 137 - 325

Fln protein: NVISPAYHYSPPLHSEHSAMRKNVSAEHSFVTGNGKQETENGDSAESEEVSSQINNRTDxxQTNGFVHIIGLTTKAVLIVGSVISVLTLASFEPKLRRSVPSLKLSELLPRRMNIPSIQSKADVPNQCPPGKVLLIT

Protein Length: 138

Fln nts: AATGTCATCTCACCTGCTTATCACTATTCTCCGCCGCTGCATTCTGAACATTCAGCCATGAGAAAGAATGTGTCTGCTGAGCATTCTTTTGTGACCGGTAATGGAAAACAGGAAACTGAAAATGGCGACTCTGCTGAAAGTGAGGAGGTAAGCTCACAAATTAATAACCGAACTGATxxxxxxCAAACAAATGGCTTCGTGCATATAATTGGTTTGACTACAAAAGCAGTTCTAATAGTTGGAAGTGTAATTTCAGTCCTCACCTTAGCTAGCTTTGAGCCCAAACTTCGTAGAAGTGTTCCTTCTTTAAAACTGTCAGAGCTATTGCCCCGGCGGATGAATATTCCTTCAATACAATCAAAGGCAGATGTTCCCAACCAGTGTCCTCCTGGGAAAGTATTATTAATTACATT

Fln Alignment:

Contig103___ISPAYHYSPPLHSEHSAMRKNVSAEHSFVTGNGKQETENGDSAES-EEVSSQINNRTDKKQTNGFVHIIGLTTKAVLIVGSVISVLTLASFEPKLRRSVPSLKLSELLPRRMNIPSIQSKADVPNQCPPGKVLLI
D5ADQ6________________ISSVHHYSPPLYSAHSARRRNVSAEHSFMTGNERQETENDDSAESKEEVSSQINNQNAKKLINGFGQIIGLTTKAVLVIASVISVLTLASFEPKLRRSVP-LKLSEVLPRRMNIPSIQSKAHVPSECPPGKVLLI

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
118		75		25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain