SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene98

Length: 1525 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene98

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene18521	4/31
SustainPine v2.0	sp_v2.0_unigene31221	27/31

Source	Descriptions	Term	Type	Identity
AutoFact	1-acyl-sn-glycerol-3-phosphate acyltransferase [Prunus mume]	-	-	63%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	94%
Blast2go	1-acyl-sn-glycerol-3-phosphate acyltransferase	-	-	82%

Source	ECs	Term	Type	e value	Identity
Blast2go	1-acylglycerol-3-phosphate O-acyltransferase.	EC:2.3.1.51	-	0.0	82%

Source	KEGGs	Term	Identity
Blast2go	Glycerolipid metabolism	00561	82%
Blast2go	Glycerophospholipid metabolism	00564	82%
Blast2go	Metabolic pathways	01100	82%

Source	GOs	Term	Type	e value	Identity
Blast2go	1-acylglycerol-3-phosphate O-acyltransferase activity	GO:0003841	Molecular Function	0.0	82%
Blast2go	endoplasmic reticulum	GO:0005783	Cellular Component	0.0	82%

Source	InterPros	Term	Type	e value	Identity
Sma3	Phospholipid/glycerol acyltransferase	IPR002123	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5A8C8

Fln msg:

Fln protein: MYQGRSVREGCRRAMELPSAVVVLPMGALFLLSGLKVNCIQALCYVILRPFSKNLYRMANRVVAELLWVELVWLIDWWAGVKIRIYADPDILQHMGKEHALVISNHRSDVDWLVGWVLAQRSGCLGSALAVMKKSSKFLPVMGWSMWFSEYVFLERNWAKDETTLKSGLKKLRDFPRPFWLALFVEGTRFTKAKLLAAQEYAASVGLPVPRNVLIPRTKGFVAAVSNLRSFVPAIYDVTVAVPKDEPSPTMLRLLKRQPSVLHVHIKRHCMTDLPDTDDGVAQWCKDTFVSKDGLLDKHQSDNTFGEHLHQPIQRPLKPLLVVLGWSSLLSLPTYKLLRHLLSSWQGSLWLTVGFILTTLVMNVFIRFSQSEHSTPAKVVPAKESNGRVLPSGKEDKDL*

Protein Length: 401

Fln nts: A_-_ATGTATCAGGGCAGATCAGTGAGGGAGGGTTGTCGCAGAGCAATGGAGTTGCCATCTGCAGTAGTTGTCCTGCCCATGGGAGCTCTCTTTCTTCTCTCAGGCCTTAAAGTCAATTGTATTCAGGCTCTATGCTATGTCATTTTGCGGCCATTTTCAAAAAATCTTTATCGGATGGCTAATAGAGTTGTGGCAGAGTTACTTTGGGTGGAACTTGTTTGGTTGATCGACTGGTGGGCAGGTGTTAAGATACGCATATATGCAGATCCTGATATATTGCAGCATATGGGTAAAGAACATGCTCTTGTAATATCCAATCACCGCAGTGACGTTGACTGGCTTGTGGGATGGGTTTTAGCCCAGCGCTCTGGTTGCCTTGGTAGTGCTCTTGCAGTTATGAAAAAATCATCAAAGTTTCTTCCAGTAATGGGATGGTCTATGTGGTTTTCAGAGTATGTATTCCTTGAGAGAAATTGGGCCAAGGATGAGACCACATTGAAGTCAGGGCTAAAGAAGTTGAGAGATTTCCCTCGACCATTTTGGCTGGCACTTTTTGTAGAGGGCACACGCTTCACCAAAGCTAAGTTGCTTGCAGCTCAGGAGTATGCGGCATCTGTGGGCTTGCCAGTGCCACGGAATGTTTTGATCCCTCGCACCAAGGGTTTTGTCGCAGCTGTTAGCAACTTGCGCTCATTTGTTCCAGCCATATATGATGTCACTGTTGCAGTTCCTAAAGATGAGCCTTCTCCAACAATGCTGCGGCTTTTGAAACGTCAACCATCGGTGTTGCATGTCCATATCAAGCGACATTGCATGACTGATTTGCCTGATACGGATGATGGAGTGGCACAGTGGTGCAAAGACACATTTGTTTCTAAGGATGGTCTGTTAGATAAACACCAAAGTGACAACACATTTGGAGAGCATCTCCATCAACCCATACAACGGCCTCTGAAGCCACTACTGGTGGTATTGGGATGGTCTTCTCTTTTATCACTGCCTACATACAAGCTATTAAGGCATCTTCTAAGCTCTTGGCAAGGTTCTCTTTGGTTGACAGTGGGTTTTATATTGACAACATTAGTGATGAACGTCTTTATACGCTTCAGCCAGTCGGAGCATTCTACTCCAGCAAAGGTTGTTCCAGCCAAAGAAAGCAATGGGAGAGTGTTGCCCAGTGGTAAGGAGGACAAAGACCTCTGA___GTAAGACACTGGATGAAATGATTTGTACGTTTGGAATCTTTGGGTAGTGGACCGTCGTATTTTCGATTCAAAAGTCATATTTTTCTCTCAGATTGTTTATAGTCAATTTCAGTGTAATCTTCCGGTAGGCTACTGAAGTATCCGGGAGCAAGTTACAAGGGATATATGATGTAGATTAGATATATCATGCATAATTTTACTTTGTAAACTGAATGGTCCATTTGTTGTAAAGTATTTACAGGGACATTCTATAATCATTTATGTTGGCTTTGGTTTCTTACCTCAAGAATTGTGTAACATAGTCAGTAATTCACATGTCACAAA

Fln Alignment:

Contig98___MELPSAVVVLPMGALFLLSGLKVNCIQALCYVILRPFSKNLYRMANRXXXXXXXXXXXXXXXXXAGVKIRIYADPDILQHMGKEHALVISNHRSDVDWLVGWVLAQRSGCLGSALAVMKKSSKFLPVMGWSMWFSEYVFLERNWAKDETTLKSGLKKLRDFPRPFWLALFVEGTRFTKAKLLAAQEYAASVGLPVPRNVLIPRTKGFVAAVSNLRSFVPAIYDVTVAVPKDEPSPTMLRLLKRQPSVLHVHIKRHCMTDLPDTDDGVAQWCKDTFVSKDGLLDKHQSDNTFGEHLHQPIQRPLKPXXXXXXXXXXXXXPTYKLLRHLLSSWQGSLWLTVGFILTTLVMNVFIRFSQSEHSTPAKVVPAKESNGRVLPSGKEDKDL
D5A8C8_______________MELPSAVVVLPMGALFLLSGLIVNCIQALCYIILRPFSKNLYRMANRVVAELLWLELVWLFDWWAGVKIRIYADPGILQHMGKEHALVISNHRSDVDWLVGWVLAQRSGCLGSALAVMKKSSKFLPVMGWSMWFSEYVFLERNWAKDETTLKSGLKKLRDFPRPFWLALFVEGTRFTNAKLLAAQEYAESVGLPVPRNVLIPRTKGFVSAVSNLRSFVPAIYDVTVAVPKDEPSPTMLRLLKSQPSVLHVHIKRHHMSDLPDTDDGVAQWCKDTFVSKDGQLDKHQSDNTFGEHLYQPIQRPLKPLLVILGWSSLLSVPAYKLLRHLLSSWQGSLCLTVGFILTTLVMNIFIRFSQSEHSTPAKVAPAKETNGRVLPIGKEDKDL

SNPs (tot: 12)

Position	A %	C %	G %	T %	Probability
108	66			33	0.997452
109	33			66	0.997452
192	20	80			0.995493
296	16	83			0.994512
394	16			83	0.994512
399	75			25	0.996473
911	75			25	0.996473
980	20		80		0.995493
1143	25			75	0.996473
1144		25	75		0.996473
1236	20		80		0.995493
1401	33			66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain