SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene94

Length: 1571 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene94 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene27993	56/67
SustainPine v2.0	sp_v2.0_unigene61037	4/67
SustainPine v2.0	sp_v2.0_unigene61346	4/67
SustainPine v2.0	sp_v2.0_unigene63556	1/67
SustainPine v2.0	sp_v2.0_unigene83794	1/67

Source	Descriptions	Term	Type	Identity
AutoFact	Proteasome subunit beta type n=1 Tax=Picea sitchensis RepID=A9NYV8_PICSI	-	-	96%
FL-Next	sp=Proteasome subunit beta type; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	96%
Blast2go	proteasome subunit beta type 7-a precursor	-	-	92%

Source	GOs	Term	Type	e value	Identity
Blast2go	peptidase activity	GO:0008233	Molecular Function	0.0	92%
Blast2go	proteasome complex	GO:0000502	Cellular Component	0.0	92%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase T1A, proteasome beta-subunit	IPR000243	-	-
Sma3	Proteasome, subunit alpha/beta	IPR001353	-	-
Sma3	Proteasome, beta-type subunit, conserved site	IPR016050	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NYV8

Fln msg:

Fln protein: MANTTIELPPKGGFSFDLCRRNEMLAKKGVQPPSFRKTGTTIVGLVFKDGVILGADTRATEGPIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLELHRYATGRESRVVTALTLLKSHLYSYQGHVSAALVLGGVDCTGPHLHTIYPHGSTDTLPFATMGSGSLAAMAMFESRYKEGMTREEGIKLVCEAICSGIFNDLGSGSNVDVCVITKGQSEYLRNYALPNPRTYVSSKGYSFAKGHTEVLSTKIIPLKEHVQIIEGDAMEE*

Protein Length: 275

Fln nts: AATGTAGCAGTGTATCAACGCAGAGTACGCGGGGACGGACTCCTCTTCCCTTTGCCGCGATTTAGGGTTTGGGAGGTCTCAAACTTCGACGGAATTTCACTGATTTCGGGAGTTTGCGGGGTATTATTCTGCGTTTTACAGGGTTTCTGTTCCCATCCGCGAAGCC_-_ATGGCAAATACTACGATCGAACTCCCCCCTAAAGGCGGCTTCAGCTTTGATTTGTGTCGGAGAAATGAAATGCTTGCGAAGAAAGGTGTTCAGCCTCCTTCGTTCCGCAAGACAGGAACAACCATTGTAGGCCTCGTTTTCAAGGATGGAGTCATTCTTGGAGCAGACACTCGTGCAACAGAAGGTCCAATTGTATGTGATAAGAACTGTGAAAAAATACATTATATGGCACCAAACATATACTGCTGTGGAGCTGGAACTGCTGCTGATACAGAAGCAGTGACAGATATGGTTAGCTCCCAACTAGAATTGCACCGCTATGCAACTGGTCGAGAATCGAGGGTTGTCACTGCTCTTACCCTTCTCAAATCTCATCTTTACAGTTACCAAGGCCATGTGAGTGCAGCCCTGGTACTTGGTGGTGTGGATTGTACAGGACCACATTTGCATACAATTTATCCCCATGGATCAACTGACACTTTACCTTTTGCTACAATGGGTTCCGGTTCTCTTGCTGCTATGGCTATGTTTGAATCAAGATACAAAGAAGGCATGACAAGAGAGGAGGGAATAAAGCTGGTTTGTGAAGCTATCTGTTCTGGAATCTTCAATGATCTGGGAAGTGGAAGTAATGTTGACGTATGTGTGATAACAAAGGGTCAAAGCGAATATTTGCGGAATTATGCGCTTCCAAATCCACGTACCTATGTTAGTTCAAAAGGTTATTCATTTGCCAAGGGACATACAGAGGTTCTTTCAACGAAAATAATCCCTTTGAAAGAGCATGTGCAAATTATTGAAGGGGATGCTATGGAAGAGTGA___GTAATGCAGAGTAAGAAACTGAAAGCATGCCTAATGAAAGGAGGCTTCCTGCATCTTTCCCGAGGAAAAAGTATTGTTTATGGATTTGTTTTTATTGTTGATGTGATGGGACAGTTATGCAGTCTTCAGTTTAACATTACTTCACTCATTGCTATTCTGAAACCATCTTATTTTGCAGTGATAAATTCTGGTATTTCTTGGGATAGTTATTTCTCCTATAAATGAATCCTTCACAGTCACTGAACATAATTTGGAAACCATTCCATTCATTAACGAATCGGGACTCGATCCCTGAGATGGATTTTGCGAAAGGAACATCACACAGATATCCAACATATTCTAAATAGATCTTCACTATCTGCAAAAATTTGTATCATAACATAAAATAATCTAGAGCTATATGATGTGATGAGAGAAGGAAGGAATGAAGAATGAAGCGCGATTAATACATAATAGGAAAATATTAACTTCAGAGAGGGTTTGATCCAGGGAAACATGGCAGAGATCGAGGTGAAGGTGGAGCGTTATGGCCGTTGAATTTCAATAGTTTCAGACCCAAATTCCATCAGGTTAATGGTACATT

Fln Alignment:

Contig94___MANTTIELPPKGGFSFDLCRRNEMLAKKGVQPPSFRKTGTTIVGLVFKDGVILGADTRATEGPIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLELHRYATGRESRVVTALTLLKSHLYSYQGHVSAALVLGGVDCTGPHLHTIYPHGSTDTLPFATMGSGSLAAMAMFESRYKEGMTREEGIKLVCEAICSGIFNDLGSGSNVDVCVITKGQSEYLRNYALPNPRTYVSSKGYSFAKGHTEVLSTKIIPLKEHVQIIEGDAMEE
A9NYV8_______________MANTAIELPPKGGFSFDLCRRNEMLAKKGVQSPSFRKTGTTIVGLVFQDGVILGADTRATEGPIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLELHRYATGRESRVVTALTLLKSHLYSYQGHVSAALVLGGVDCTGPHLHTIYPHGSTDTLPFATMGSGSLAAMAMFESRYREGMTREEGIKLVCQAICSGIFNDLGSGSNVDVCVITKGQKEYLRNYELPNPRTYVSSKGYSFAKGHTEVLSTKITPLKEHVKIIEGDAMEE

SNPs (tot: 17)

Position	A %	C %	G %	T %	Probability
762	16	83			0.994512
765	83			16	0.994512
873	20			80	0.995493
876	80			20	0.995493
877	80			20	0.995493
979		66		33	0.997452
1195	33	33	33		0.997753
1197		66		33	0.997452
1382			42	57	1.0
1455	20		80		0.995493
1482	25		75		0.996473
1483		25		75	0.996473
1484	25	75			0.996473
1485			75	25	0.996473
1486	75			25	0.996473
1499		33		66	0.997452
1502	66		33		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain