SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene90

Length: 567 nt

UniGene Fasta

>biog3_v1.0_unigene90
AATGTTATTGCTCAGAAATTGAGCTTGGGGAGGCAACAATGGATCAATTGTGATATACGCAATTTCAGAATGGATATTTTGGGTACAGTTTGGTGTTATTATGGCAGACCCACCCTGGGATATTCACATGGAGTTGCCATATGGAACAATGGCTGATGATGAGATGAGGAATTTGAATGTGCCAACTCTGCAGACTGATGGTCTCATTTTCCTTTGGGTGACTGGACGTGCAATGGAACTTGGACGAGAATGTCTGGAACTATGGGGTTATCGTCGCATTGAAGAGCTTATTTGGGTGAAGACTAATCAGCTTCAGCGAATTATTAGAACAGGGAGAACAGGCCACTGGTTGAATCACAGTAAAGAACATTGTCTTGTTGGTATTAAGGGTGATCCAGAAGTGAACCGTAACATTGACACCGATGTCCTTGTTTCTGAAGTTCGAGAGACAAGCCGAAAACCGGATGAAATGTATCCGATGCTAGAAAGGATAAGTCCTCGTACCCGAAAACTTGAACTGTTTGCACGGATGCATAACACTCATGCAGGGTGGATGTCACTTGGTAA

Ace file of the UniGene biog3_v1.0_unigene90

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene356	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	RecName: Full=Putative N6-adenosine-methyltransferase MT-A70-like gb\|ABD28511.1\| MT-A70 [Medicago truncatula]	-	-	82%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	100%
Blast2go	n6-adenosine-methyltransferase mt-a70-like protein	-	-	87%

Source	ECs	Term	Type	e value	Identity
Blast2go	mRNA (2'-O-methyladenosine-N(6)-)-methyltransferase.	EC:2.1.1.62	-	0.0	87%

Source	GOs	Term	Type	Identity
Blast2go	mRNA methylation	GO:0080009	Biological Process	87%
Blast2go	embryo development ending in seed dormancy	GO:0009793	Biological Process	87%
Blast2go	RNA binding	GO:0003723	Molecular Function	87%
Blast2go	mRNA (2'-O-methyladenosine-N6-)-methyltransferase activity	GO:0016422	Molecular Function	87%
Blast2go	protein binding	GO:0005515	Molecular Function	87%
Blast2go	nuclear speck	GO:0016607	Cellular Component	87%
Blast2go	chloroplast	GO:0009507	Cellular Component	87%

Source	InterPros	Term	Type	e value	Identity
Sma3	Aminoacyl-tRNA synthetase, class I, conserved site	IPR001412	-	0.0	-
Sma3	MT-A70	IPR007757	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LPF6

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 84 aas, your sequence is shorter than subject: 188 - 804

Fln protein: MLLLRN*AWGGNNGSIVIYAISEWIFWVQFGVIMADPPWDIHMELPYGTMADDEMRNLNVPTLQTDGLIFLWVTGRAMELGRECLELWGYRRIEELIWVKTNQLQRIIRTGRTGHWLNHSKEHCLVGIKGDPEVNRNIDTDVLVSEVRETSRKPDEMYPMLERISPRTRKLELFARMHNTHAGWMSLG

Protein Length: 189

Fln nts: AATGTTATTGCTCAGAAATTGAGCTTGGGGAGGCAACAATGGATCAATTGTGATATACGCAATTTCAGAATGGATATTTTGGGTACAGTTTGGTGTTATTATGGCAGACCCACCCTGGGATATTCACATGGAGTTGCCATATGGAACAATGGCTGATGATGAGATGAGGAATTTGAATGTGCCAACTCTGCAGACTGATGGTCTCATTTTCCTTTGGGTGACTGGACGTGCAATGGAACTTGGACGAGAATGTCTGGAACTATGGGGTTATCGTCGCATTGAAGAGCTTATTTGGGTGAAGACTAATCAGCTTCAGCGAATTATTAGAACAGGGAGAACAGGCCACTGGTTGAATCACAGTAAAGAACATTGTCTTGTTGGTATTAAGGGTGATCCAGAAGTGAACCGTAACATTGACACCGATGTCCTTGTTTCTGAAGTTCGAGAGACAAGCCGAAAACCGGATGAAATGTATCCGATGCTAGAAAGGATAAGTCCTCGTACCCGAAAACTTGAACTGTTTGCACGGATGCATAACACTCATGCAGGGTGGATGTCACTTGGTAA

Fln Alignment:

Contig90___QFGVIMADPPWDIHMELPYGTMADDEMRNLNVPTLQTDGLIFLWVTGRAMELGRECLELWGYRRIEELIWVKTNQLQRIIRTGRTGHWLNHSKEHCLVGIKGDPEVNRNIDTDVLVSEVRETSRKPDEMYPMLERISPRTRKLELFARMHNTHAGWMSLG
B8LPF6_______________QFGVIMADPPWDIHMELPYGTMADDEMRNLNVPTLQTDGLIFLWVTGRAMELGRECLELWGYRRIEELIWVKTNQLQRIIRTGRTGHWLNHSKEHCLVGIKGDPEVNRNIDTDVLVSEVRETSRKPDEMYPMLERISPRTRKLELFARMHNTHAGWMSLG

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain