SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene84

Length: 215 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene84
ATATCAGACGATGGAATTCCAGATCTGGGAGGTATTCCAGAAGAGGAACCAAGTTTTTAGATGAAGTGCAACAACCTGTTCTTGTTTTCCCAGGAGCATATAGGACAGTTTCTATAGAGTTGAAGATTCATCATCTTGCAGTAAATGCAATATTGAAGAGCAACCAGGTGAATGAAATGGAAGGAGGAACATTATTAGGATTTGAGCTAGACATT

Ace file of the UniGene biog3_v1.0_unigene84 (antisense)

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene11730	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	DNA polymerase n=1 Tax=Physcomitrella patens subsp. patens RepID=A9SXI7_PHYPA	-	-	63%
FL-Next	sp=DNA polymerase; Selaginella moellendorffii (Spikemoss).	-	-	78%
Blast2go	dna polymerase epsilon catalytic subunit a	-	-	73%

Source	ECs	Term	Type	e value	Identity
Blast2go	DNA-directed DNA polymerase.	EC:2.7.7.7	-	0.0	73%

Source	KEGGs	Term	Identity
Blast2go	Purine metabolism	00230	73%
Blast2go	Pyrimidine metabolism	00240	73%
Blast2go	Metabolic pathways	01100	73%

Source	GOs	Term	Type	Identity
Blast2go	negative regulation of long-day photoperiodism, flowering	GO:0048579	Biological Process	73%
Blast2go	DNA replication	GO:0006260	Biological Process	73%
Blast2go	positive regulation of S phase of mitotic cell cycle	GO:0045750	Biological Process	73%
Blast2go	embryo development ending in seed dormancy	GO:0009793	Biological Process	73%
Blast2go	zinc ion binding	GO:0008270	Molecular Function	73%
Blast2go	DNA-directed DNA polymerase activity	GO:0003887	Molecular Function	73%
Blast2go	DNA binding	GO:0003677	Molecular Function	73%
Blast2go	nucleotide binding	GO:0000166	Molecular Function	73%
Blast2go	epsilon DNA polymerase complex	GO:0008622	Cellular Component	73%
Blast2go	apoplast	GO:0048046	Cellular Component	73%

Source	InterPros	Term	Type	Identity
Sma3	RNA polymerase sigma-70 factor	IPR000943	-	-
Sma3	Aminotransferase, class-II, pyridoxal-phosphate binding site	IPR001917	-	-
Sma3	DNA-directed DNA polymerase, family B, exonuclease domain	IPR006133	-	-
Sma3	DNA-directed DNA polymerase, family B, multifunctional domain	IPR006134	-	-
Sma3	DNA-directed DNA polymerase, family B	IPR006172	-	-
Sma3	DNA polymerase epsilon, catalytic subunit A, C-terminal	IPR013697	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: D8RS33

Fln msg: Overlapping hits, possible frame ERROR between 57 and 54, Distance to subject end: 730 aas, your sequence is shorter than subject: 72 - 2412

Fln protein: ISDDGIPDLGGIPEEEPxxxDEVQQPVLVFPGAYRTVSIELKIHHLAVNAILKSNQVNEMEGGTLLGFELDI

Protein Length: 73

Fln nts: ATATCAGACGATGGAATTCCAGATCTGGGAGGTATTCCAGAAGAGGAACCAxxxxxxxxxGATGAAGTGCAACAACCTGTTCTTGTTTTCCCAGGAGCATATAGGACAGTTTCTATAGAGTTGAAGATTCATCATCTTGCAGTAAATGCAATATTGAAGAGCAACCAGGTGAATGAAATGGAAGGAGGAACATTATTAGGATTTGAGCTAGACATT

Fln Alignment:

Contig84___ISDDGIPDLGGIPEEEPSxLDEVQQPVLVFPGAYRTVSIELKIHHLAVNAILKSNQVNEMEGGTLLGFELD
D8RS33_______________ISDDGLPDLGGVPQDEPSxTDVVQQPSLCYPGAYRSVTIELKINHLAVNALLKSTQVNELEGGALLGFELD

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
84	25		75		0.996473
89	75			25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain