SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene81

Length: 1337 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene81

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene14584	40/40

Source	Descriptions	Term	Type	Identity
AutoFact	Nucleosome/chromatin assembly factor group n=7 Tax=core eudicotyledons RepID=A9PHH9_POPTR	-	-	83%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	100%
Blast2go	multicopy suppressor of ira1	-	-	92%

Source	GOs	Term	Type	Identity
Blast2go	trichome differentiation	GO:0010026	Biological Process	92%
Blast2go	positive regulation of cell cycle	GO:0045787	Biological Process	92%
Blast2go	regulation of flower development	GO:0009909	Biological Process	92%
Blast2go	regulation of gene expression by genetic imprinting	GO:0006349	Biological Process	92%
Blast2go	seed coat development	GO:0010214	Biological Process	92%
Blast2go	pollen development	GO:0009555	Biological Process	92%
Blast2go	heterochromatin assembly	GO:0031507	Biological Process	92%
Blast2go	leaf development	GO:0048366	Biological Process	92%
Blast2go	cell proliferation	GO:0008283	Biological Process	92%
Blast2go	embryo development ending in seed dormancy	GO:0009793	Biological Process	92%
Blast2go	protein binding	GO:0005515	Molecular Function	92%
Blast2go	chromatin remodeling complex	GO:0016585	Cellular Component	92%
Blast2go	chloroplast	GO:0009507	Cellular Component	92%

Source	InterPros	Term	Type	Identity
Sma3	WD40/YVTN repeat-like-containing domain	IPR015943	-	-
Sma3	WD40 repeat	IPR001680	-	-
Sma3		IPR019782	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-
Sma3	WD40-repeat-containing domain	IPR017986	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LS29

Fln msg: Separated hits, possible frame ERROR between 447 and 449, your sequence is shorter than subject: 364 - 421

Fln protein: DYSVQKMILGTHTSDNEPNYLMLAQVQLPLEDAENDARQYDDERGEIGGFGCANGKVQVIQQINHDGEVNRARYMPQNPFIIATKTVSAEVYVFDYSKHPSKPPQDGGCNPDLRLRGHNTEGYGLSWSPFKHGHLLSGSDDAQICLWDxxNVPAKNRVLEAQQIFKVHEGVVEDVAWHLRHEYLLGSVGDDRHLLIWDLRTSATNKPLHSVVAHQGEVNCLAFNPFNEWVLATGSADRTVKLFDLRKISSALHTFSCHKEEVFQIGWSPKNETILASCSADRRLMVWDLSRIDDEQTAEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVIASVAEDNILQIWQMAENIYHDEEDMLPEEAV*

Protein Length: 365

Fln nts: GATTACTCCGTTCAGAAAATGATACTGGGGACTCATACTTCCGACAACGAGCCCAACTATCTGATGCTGGCCCAAGTTCAACTCCCGCTAGAGGATGCAGAGAATGACGCCAGGCAGTATGACGACGAGCGCGGGGAGATTGGAGGGTTCGGCTGCGCTAATGGCAAGGTACAAGTAATACAGCAAATCAATCACGATGGAGAGGTCAATAGAGCCCGATACATGCCACAAAATCCTTTCATTATTGCCACGAAAACAGTTAGTGCAGAAGTCTATGTGTTTGACTACAGCAAGCATCCTTCAAAGCCTCCTCAAGATGGTGGCTGTAATCCTGATCTCAGATTGAGGGGTCATAATACAGAAGGTTATGGTTTATCATGGAGCCCTTTTAAGCATGGCCATCTTTTAAGTGGTTCAGACGATGCACAAATCTGTTTGTGGGACATxxxTAATGTACCTGCCAAAAACAGAGTGCTTGAGGCCCAACAAATATTTAAGGTGCACGAGGGTGTTGTAGAAGATGTTGCATGGCATTTAAGGCATGAGTACCTTTTGGGGTCTGTCGGAGATGACCGCCATTTGTTGATATGGGATTTGCGTACATCTGCAACTAATAAACCACTGCATTCAGTAGTAGCTCATCAAGGTGAGGTTAACTGTCTTGCATTCAATCCTTTCAATGAGTGGGTACTGGCTACAGGATCCGCAGACAGAACGGTGAAACTTTTTGATCTGCGCAAGATATCCAGTGCTTTGCATACCTTTTCCTGTCACAAGGAGGAGGTTTTCCAAATAGGCTGGAGCCCCAAAAATGAAACAATATTGGCTTCTTGTAGTGCAGACAGAAGGCTTATGGTGTGGGACCTCAGCAGGATTGACGATGAGCAAACAGCAGAGGATGCAGAAGATGGACCACCTGAGTTGCTGTTTATTCATGGTGGACATACTAGTAAGATATCAGATTTCTCATGGAACCCGTGTGAGGATTGGGTTATAGCTAGTGTAGCTGAAGATAACATTCTCCAAATCTGGCAAATGGCTGAAAATATATACCATGACGAGGAGGATATGCTTCCTGAAGAAGCAGTGTAACTTTTATCTAGCTAGAAGTCGTGAAATTAAGAGGGATGTGAGGATTGGGTTATAGCTTGTGTAGCTGAAGATAACGTTCTCCAAATCTGGCAAATGGCTGAAAATGTATATCATGGTGAGGGGGATATGGCTTCCAAAGAAACATTGTAAGAGCTAGCTAGAATTTGTGAAATTAAGAGGTGTATTCGCTTTCAGAGTTTCTCAACAAATGACATGGTTCTCATTCCATTTTCTTTTATATAATGAG

Fln Alignment:

Contig81___DYSVQKMILGTHTSDNEPNYLMLAQVQLPLEDAENDARQYDDERGEIGGFGCANGKVQVIQQINHDGEVNRARYMPQNPFIIATKTVSAEVYVFDYSKHPSKPPQDGGCNPDLRLRGHNTEGYGLSWSPFKHGHLLSGSDDAQICLWDIxNVPAKNRVLEAQQIFKVHEGVVEDVAWHLRHEYLLGSVGDDRHLLIWDLRTSATNKPLHSVVAHQGEVNCLAFNPFNEWVLATGSADRTVKLFDLRKISSALHTFSCHKEEVFQIGWSPKNETILASCSADRRLMVWDLSRIDDEQTAEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVIASVAEDNILQIWQMAENIYHDEEDMLPEEAV
B8LS29_______________DYSVQKMILGTHTSDNEPNYLMLAQVQLPLEDAENDARQYDDERGEIGGFGCANGKVQVIQQINHDGEVNRARYMPQNPFIIATKTVSAEVYVFDYSKHPSKPPQDGGCNPDLRLRGHNTEGYGLSWSPFKHGHLLSGSDDAQICLWDIxNAPAKNKVLEAQQIFKVHEGVVEDVAWHLRHEYLFGSVGDDRHLLIWDLRTSAANKPLHSVVAHQGEVNCLAFNPFNEWVLATGSADRTVKLFDLRKITSALHTFSCHKEEVFQIGWSPKNETILASCSADRRLMVWDLSRIDDEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVIASVAEDNILQIWQMAENIYHDEEDMPPEETL

SNPs (tot: 22)

Position	A %	C %	G %	T %	Probability
720		14	85		0.993533
721	14		85		0.993533
723			85	14	0.993533
763	80			20	0.995493
841	14		85		0.993533
844			85	14	0.993533
845	85			14	0.993533
857	12			87	0.992554
858			87	12	0.992554
964		18	81		0.999994
1066	16		83		0.994512
1068			83	16	0.994512
1070	83			16	0.994512
1090			83	16	0.994512
1101	85		14		0.993533
1103	14	85			0.993533
1104		14		85	0.993533
1107		85		14	0.993533
1150		14	85		0.993533
1151	14	85			0.993533
1281	33			66	0.997452
1284	33	66			0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain