SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene71

Length: 1717 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene71

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene27833	54/86
SustainPine v2.0	sp_v2.0_unigene60967	31/86

Source	Descriptions	Term	Type	Identity
AutoFact	26S proteasome regulatory subunit N9 [Arabidopsis thaliana] dbj\|BAC42409.1\| unknown protein [Arabidopsis thaliana] gb\|AAP86669.1\| 26S proteasome subunit RPN9b [Arabidopsis thaliana] gb\|AEE84124.1\| 26S proteasome regulatory subunit N9 [Arabidopsis thaliana	-	-	77%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	98%
Blast2go	26s proteasome regulatory subunit n9	-	-	92%

Source	GOs	Term	Type	e value	Identity
Blast2go	proteasome complex	GO:0000502	Cellular Component	0.0	92%

Source	InterPros	Term	Type	e value	Identity
Sma3	Proteasome component (PCI) domain	IPR000717	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5ADZ2

Fln msg: your sequence is longer than subject: 387 - 100

Fln protein: MAALKYLETQRAAQPELAEWYNALADLYERKLWHQLTLKLEQFVALAVFQAGDALIQLYHNFITDFETKINLLKLAHFAVIVSRQYTEREAAISYLEGVIEKLRATRDTRIEEPILYVRMQIAALKLEQSEQKECKKLLDEGKHTLDSMTDIDPSVYASYHWVSSQYHKSRQEFAEFYKSALLFLAYTTVESLSEPFKLDLAFDLSLAALLGDNIYNFGELLAHPIVKSLLGTSVEWLYYILQAFNAGDLARYQELCHVHRDALNAQPALVENEKKLLEKINILCLMEIIFSRPSEDRTVPLSIIADRTKLSIEDVEYLLMKSLSVHLIEGVIDQVDATVHVSWVQPRVLGIPQIKSLRDKLDNWLQKVHTTLLAVEAETPDLVAS*

Protein Length: 388

Fln nts: GGAAGGCAGGTACTAACAGTTAGTTAATTTTCAGAGGAACGGGCCGCGAAGGGGTCAGAGAATTCACATCCCGGCATTCTGCGTTTGTTTAAGGCTTTTCTTTGCGGATCTACGTTTGTAAA_-_ATGGCCGCTCTCAAGTATCTGGAAACGCAGAGGGCAGCCCAGCCCGAACTGGCCGAATGGTACAATGCATTGGCTGATCTCTACGAGCGCAAGCTGTGGCACCAACTCACTCTCAAGCTCGAACAGTTCGTAGCCCTCGCAGTTTTTCAGGCTGGTGATGCGCTTATCCAACTATATCACAATTTTATAACAGATTTTGAGACGAAGATCAATCTGCTTAAGCTTGCACATTTTGCTGTTATTGTTTCTCGTCAGTACACAGAAAGGGAAGCTGCTATCAGCTACTTAGAGGGAGTAATCGAGAAGCTTCGTGCCACAAGGGATACACGAATTGAGGAACCAATACTATATGTTAGAATGCAAATAGCTGCATTAAAACTTGAACAAAGTGAACAGAAAGAATGTAAAAAGCTACTAGATGAGGGCAAACATACACTGGACAGTATGACTGATATAGATCCTTCTGTTTATGCAAGCTACCATTGGGTCTCATCTCAGTATCATAAGTCGAGACAAGAATTTGCTGAGTTTTATAAAAGTGCTCTTCTGTTTCTGGCTTATACTACTGTAGAGTCTCTTTCGGAACCGTTCAAGCTGGATTTAGCATTTGACTTGTCTCTTGCTGCATTACTTGGAGATAACATATACAACTTTGGAGAACTGTTGGCACATCCAATTGTGAAGAGTCTTCTGGGTACGAGTGTAGAGTGGCTATATTATATTTTACAAGCATTTAATGCTGGTGACTTAGCTCGGTATCAAGAACTATGTCATGTTCATAGGGATGCTCTCAATGCACAACCGGCGCTTGTAGAGAATGAGAAAAAGTTGCTGGAAAAGATTAATATCCTATGCTTGATGGAGATCATATTTAGCCGTCCTTCAGAAGATAGAACAGTCCCACTGAGTATCATTGCAGACCGAACCAAATTATCAATTGAAGATGTTGAGTATCTCCTCATGAAAAGCCTTTCTGTTCATTTAATTGAAGGGGTTATTGACCAAGTTGATGCGACTGTGCATGTATCTTGGGTACAGCCTAGAGTGCTGGGAATACCCCAGATCAAATCCTTAAGGGATAAGCTTGACAATTGGCTGCAAAAAGTCCACACAACTCTGTTGGCTGTTGAAGCTGAAACCCCAGATTTAGTGGCATCATGA___TTGAAAAGTAAAGCGTAGACGAAGGCATCAAATGAAAGCATGGCCATTTTAAGTTGTTGACAATTGTCAATGAGTCTTCCATGGAGATGCGATAATTTAACCCCATCTTTTTCAGCCGTCTGCATTATTGTTGTTAGCTTTTCAAAGATAGTAATTTTGTGCCTTTCTTTGAGGTCAGAGAATTCATGCAGCAATTTGTCCTAACAGAGCATTTGTTTTCAGCACTGTCAAAAAAGACTCAGTTTGCTGATTTTTGTAGGGATCGAATCTGTAACTTTGCTGGCCATGAATATTTCACTGAGATCAGTATAGTCCATCTTTTGTGTGTTGAATTTCAATTTGATAAGAGATGTAATATTTGGGAACGAATATTATTCTGTAGCTGCTAATAATTCCAGGATATTTAATGCTACTCCTTATTAGTTTTATACATT

Fln Alignment:

Contig71___MEIIFSRPSEDRTVPLSIIADRTKLSIEDVEYLLMKSLSVHLIEGVIDQVDATVHVSWVQPRVLGIPQIKSLRDKLDNWLQKVHTTLLAVEAETPDLV
D5ADZ2_______________MEIIFSRPSEDRTVPLSIIADRTKLSIEDVEYLLMKSLSVHLIEGVIDQVDGTVHVSWVQPRVLGIPQIKSLRDKLDNWLQKVHTTLLAVEAETPDLV

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
1665		20		80	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain