SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene70

Length: 776 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene70 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene17050	5/12
SustainPine v2.0	sp_v2.0_unigene18577	4/12
SustainPine v2.0	sp_v2.0_unigene54212	3/12

Source	Descriptions	Term	Type	Identity
AutoFact	Putative sinapyl alcohol dehydrogenase (Fragment) n=1 Tax=Cedrus deodara RepID=E5F5N8_CEDDE	-	-	83%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	87%
Blast2go	sinapyl alcohol dehydrogenase	-	-	90%

Source	InterPros	Term	Type	Identity
Sma3	Alcohol dehydrogenase GroES-like	IPR013154	-	-
Sma3	Alcohol dehydrogenase superfamily, zinc-type	IPR002085	-	-
Sma3	Alcohol dehydrogenase, C-terminal	IPR013149	-	-
Sma3	Alcohol dehydrogenase, zinc-type, conserved site	IPR002328	-	-

Full-Lengther Next Prediction

SNPs (tot: 18)

Position	A %	C %	G %	T %	Probability
249	25	75			0.996473
258	25		75		0.996473
357	14	85			0.993533
359		85	14		0.993533
370	12			87	0.992554
371	12			87	0.992554
373			12	87	0.992554
374		87		12	0.992554
393			87	12	0.992554
407	28			71	1.0
410			71	28	1.0
473			20	80	0.995493
480		20		80	0.995493
491	16			83	0.994512
505	20			80	0.995493
542	80		20		0.995493
576			80	20	0.995493
585	20			80	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain