SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene63

Length: 1154 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene63

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene7633	18/18

Source	Descriptions	Term	Type	Identity
AutoFact	glucan endo-1,3-beta-glucosidase 11 [Arabidopsis thaliana] sp\|Q8L868.1\|E1311_ARATH RecName: Full=Glucan endo-1,3-beta-glucosidase 11; AltName: Full=(1->3)-beta-glucan endohydrolase 11; Short=(1->3)-beta-glucanase 11; AltName: Full=Beta-1,3-endoglucanase 1	-	-	48%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	90%
Blast2go	protein	-	-	73%

Source	ECs	Term	Type	e value	Identity
Blast2go	Hydrolases, Glycosylases, Glycosidases, i.e. enzymes hydrolyzing O- and S-glycosyl compounds.	EC:3.2.1.-	-	0.0	73%

Source	KEGGs	Term	Identity
Blast2go	Ascorbate and aldarate metabolism	00053	73%
Blast2go	Ubiquinone and other terpenoid-quinone biosynthesis	00130	73%
Blast2go	Amino sugar and nucleotide sugar metabolism	00520	73%
Blast2go	Glycosaminoglycan degradation	00531	73%
Blast2go	Metabolic pathways	01100	73%

Source	GOs	Term	Type	Identity
Blast2go	carbohydrate metabolic process	GO:0005975	Biological Process	73%
Blast2go	hydrolase activity, hydrolyzing O-glycosyl compounds	GO:0004553	Molecular Function	73%
Blast2go	cation binding	GO:0043169	Molecular Function	73%
Blast2go	cytoplasm	GO:0005737	Cellular Component	73%
Blast2go	anchored to plasma membrane	GO:0046658	Cellular Component	73%
Blast2go	nucleus	GO:0005634	Cellular Component	73%

Source	InterPros	Term	Type	Identity
Sma3	Glycoside hydrolase, family 17	IPR000490	-	-
Sma3	Glycoside hydrolase, subgroup, catalytic domain	IPR013781	-	-
Sma3	TonB box, conserved site	IPR010916	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LQK4

Fln msg: Distance to subject end: 83 aas, your sequence is shorter than subject: 368 - 451

Fln protein: MEAKTRPTAELDLRRGMGFRWAFILLLSVASIQSTEGFSVTGTVGINYGQIANNLPSPSEVVELLQASNLTNVRIYDANPQILNALRNTSVEIVVSLGNEYVATMSARPDKARQWVKKNVAAYIPAGTNITGVLVGNEVYAGNDTVLKQNLMGALKNIHSALVSLGLDNTVKVSTAHSFDVFVSSFPPSSCAFSDKSVTYMKQLLDFLSATHAPFLVNVYPYFAYKGDPSNVPLDYALFRPSNGVVDSKTNLHYDNLFYAQIDAAYSALAALGYGKVEVRVSETGWPSKGDDDEVGATPENAKTYNGNLLERLHKKEGTPLKPNVSVQAFIFALFNENLKTGPTSERNYGLFKPDGTETYDLGLKGYI

Protein Length: 369

Fln nts: CTATCAATCTTGGGCCTTTACCTTCACAAAGTGCTCAATTCAGAAAATCC_-_ATGGAAGCCAAAACGAGGCCAACAGCAGAGCTGGATTTGAGAAGGGGCATGGGATTTCGCTGGGCATTCATTCTGCTGCTCTCAGTTGCTTCAATACAGAGCACTGAAGGGTTCAGTGTCACGGGAACTGTAGGAATAAACTACGGGCAAATAGCGAACAACCTGCCATCCCCGTCCGAGGTCGTGGAGTTGCTGCAGGCTTCCAATCTGACAAATGTCCGGATCTACGACGCAAATCCACAGATTCTCAACGCGCTCCGCAACACCAGCGTGGAGATCGTGGTCAGCCTCGGCAACGAATATGTAGCCACGATGAGCGCCCGCCCGGACAAGGCCCGGCAGTGGGTGAAAAAGAACGTGGCAGCCTACATTCCCGCGGGGACTAACATCACGGGCGTCCTTGTGGGCAACGAGGTCTACGCGGGCAACGATACGGTACTGAAACAGAATCTGATGGGTGCTCTGAAGAACATACACTCGGCCCTGGTGAGCCTCGGCCTCGACAACACCGTTAAGGTCTCCACGGCGCACTCTTTCGACGTCTTCGTATCCTCCTTCCCGCCTTCCAGTTGCGCCTTCAGCGACAAATCCGTGACTTACATGAAGCAGCTCTTGGACTTTCTTTCCGCAACGCACGCGCCTTTTCTGGTCAATGTGTACCCCTATTTTGCCTACAAGGGCGACCCGAGCAACGTCCCTCTGGACTACGCTCTCTTCCGGCCCAGCAATGGCGTGGTCGATTCCAAGACCAATTTGCACTACGACAACCTGTTCTACGCCCAGATCGACGCTGCGTACTCGGCGCTCGCCGCTCTGGGCTACGGTAAGGTCGAGGTCAGGGTCTCGGAGACAGGGTGGCCCTCCAAGGGGGACGATGATGAGGTCGGTGCCACGCCCGAGAATGCAAAGACTTACAATGGGAACCTTCTGGAGAGGCTCCACAAGAAGGAGGGTACTCCCCTGAAGCCCAATGTGAGCGTGCAGGCCTTCATTTTTGCGCTCTTTAATGAGAATTTGAAGACCGGGCCTACATCCGAGAGAAATTATGGGCTCTTTAAACCAGACGGAACCGAGACGTATGACCTTGGCTTGAAAGGATACATT

Fln Alignment:

Contig63___MEAKTRPTAELDLRRGMGFRWAFILLLSVASIQSTEGFSVTGTVGINYGQIANNLPSPSEVVELLQASNLTNVRIYDANPQILNALRNTSVEIVVSLGNEYVATMSARPDKARQWVKKNVAAYIPAGTNITGVLVGNEVYAGNDTVLKQNLMGALKNIHSALVSLGLDNTVKVSTAHXXXXXXXXXXXXXXXXXXKSVTYMKQLLDFLSATHAPFLVNVYPYFAYKGDPSNVPLDYALFRPSNGVVDSKTNLHYDNLFYAQIDXXXXXXXXXXXXKVEVRVSETGWPSKGDDDEVGATPENAKTYNGNLLERLHKKEGTPLKPNVSVQAFIFALFNENLKTGPTSERNYGLFKPDGTETYDLGLKG
B8LQK4_______________MEAKTRPKSELDFRTGMTFRWAFILLLSVSSLQSTESLSVTGTVGINYGQIANNLPSPSEVVELLQSSNLTNVRIYDANPAILNALRNTSVEIVVSLGNEYVATMSARSDKARQWVKKNVAAYIPAGTNITGVLVGNEVYSGNDTVLKENLMGALKNIHSALVSLGLDKSVKVSTAHSFEVFGSSFPPSSCVFSDKTVAYMKQLLDFLSATHATFLVNVYPYFAYKGDTTNVPLNYALFRPSDGVVDSKNNLHYDNLFYAQIDAAYAALAALGYGKVEVRVSETGWPSKGDDDEVGATPDNAKTYNGNLLERLRKKEGTPLQPNVSVQAFIFALFNENMKPGPTSERNYGLFKPDGTETYDLGLKG

SNPs (tot: 28)

Position	A %	C %	G %	T %	Probability
115	33	66			1.0
118			33	66	1.0
119		33		66	1.0
240	25		75		0.996473
241	25			75	0.996473
244		75		25	0.996473
481		80		20	0.995493
572	16			83	0.994512
573	16	83			0.994512
574		83		16	0.994512
575	83		16		0.994512
576		83		16	0.994512
658			83	16	0.994512
659		83		16	0.994512
662	20	80			0.995493
663		20		80	0.995493
664	20	80			0.995493
674	20	80			0.995493
675	20			80	0.995493
677			20	80	0.995493
678		80		20	0.995493
787	25		75		0.996473
788	25		75		0.996473
790		75	25		0.996473
791			75	25	0.996473
1062		33	66		0.997452
1064			66	33	0.997452
1065	66			33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain