SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
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Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene60

Length: 463 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene60
ATCGTAATCATAAGAATTGCAACCACGGGAGCCTGCGGCTGAATCCGAGGATCGGAGATTCCTCGTTGGACGGCGGGCTCCGACATCTTCATCAATCGGCTCCCGTTAACGTGCTGGACTGGAGCAAAATACTAGGAGTCGGCCACCTGAAAGAGCAGAACCCCGATGACAGACGATTTCGAACAATGGCCGGCCACAAGGAGGAGGAGAGGCTGCCACCGCACGAGTACCTGGCGAGGGAGCACGATCGCTGCCGGAATTTTAGCATGTCGTCCGGTTGGGTAGGCGTGGGGCTGAAGGGCCGAGAGATGAGCCGAGTTCGAAACGCCGTGTGGAGGCAGACCGGATTTCTTGGCTGAAAAATAACCTTGTTCCTCTAAAGAAAATAAAAGGGAAAGATCTTTCGTCGTCAAGTGGCTATCTTTAAACGGAAAGATCTTCGCTTATTTTTTCTTTCTACATT

Ace file of the UniGene biog3_v1.0_unigene60 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene25789	2/5
SustainPine v2.0	sp_v2.0_unigene28600	3/5

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DUF584 domain containing protein	-	-	4.0e-24	42%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	62%
Blast2go	protein	-	-	0.0	65%

Source	InterPros	Term	Type	e value	Identity
Sma3	Senescence regulator	IPR007608	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9P0H2

Fln msg: your sequence is shorter than subject: 119 - 172

Fln protein: RNHKNCNHGSLRLNPRIGDSSLDGGLRHLHQSAPVNVLDWSKILGVGHLKEQNPDDRRFRTMAGHKEEERLPPHEYLAREHDRCRNFSMSSGWVGVGLKGREMSRVRNAVWRQTGFLG*

Protein Length: 120

Fln nts: ATCGTAATCATAAGAATTGCAACCACGGGAGCCTGCGGCTGAATCCGAGGATCGGAGATTCCTCGTTGGACGGCGGGCTCCGACATCTTCATCAATCGGCTCCCGTTAACGTGCTGGACTGGAGCAAAATACTAGGAGTCGGCCACCTGAAAGAGCAGAACCCCGATGACAGACGATTTCGAACAATGGCCGGCCACAAGGAGGAGGAGAGGCTGCCACCGCACGAGTACCTGGCGAGGGAGCACGATCGCTGCCGGAATTTTAGCATGTCGTCCGGTTGGGTAGGCGTGGGGCTGAAGGGCCGAGAGATGAGCCGAGTTCGAAACGCCGTGTGGAGGCAGACCGGATTTCTTGGCTGA___AAAATAACCTTGTTCCTCTAAAGAAAATAAAAGGGAAAGATCTTTCGTCGTCAAGTGGCTATCTTTAAACGGAAAGATCTTCGCTTATTTTTTCTTTCTACATT

Fln Alignment:

Contig60___RNHKNCNHG-----------SLRLNPRIGDSSLDGGLRHLHQSAPVNVLDWSKILGVGHLKEQNPDDRRFRTMAGHKEEERLPPHEYLAREHDRCRNFSMSSGWVGVGLKGREMSRVRNAVWRQTGFLG
A9P0H2_______________RKDNNCNHGQFVIHSTGFHGSLRMIPRFGDSESDTRLRHHHQSAPVNVPDWSKILGVDHRKEQNPVTVDVGMAGDEEEEERLPPHEYLAREHARCR--------IGVGLKGRDMSRVRNAVWRQTGFLG

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
259	25	75			0.996473
261	25			75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain