SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene54

Length: 492 nt

UniGene Fasta

>biog3_v1.0_unigene54
AATGTAGGGTTCAACGCAGTGTACGCGGGGGAGTTCAGAATGGCACAAAAAATTTTGGAGCCTGCTGCAGGGGGTTTGCTGGTTGATGCCAGCTGTGGGAGCGGATTATTTTCCCGACGCTTCGCCAACAGTGGGCTTTATTCGGGGGTAGTGGCTCTTGACTTCTCTGAAAACATGTTGCGCCAGTGCTATGAGTTCATCAAACAGGATAAAGCTCTGTCTACAGCGAACCTAGCTCTGGTTAGGGCGGATATTTCAAGGCTTCCTTTTACAACAGGCTCTGTTGATGCTGTACATGCGGGTGCTGCATTGCACTGTTGGCCATCTCCCTCCTCGGCTGTAGCAGAAATCAGTCGTGTTCTGAGACCTGGTGGTGTGTTTGTGGCAACAACCTTTGTTTTTTCTGGGATCTTAGATTCAGATATTGTGAAGCCATTACGTCAGGCAATGCAAGCGACAACCACCACAAGTTATTTCACAGAAAGAGACATT

Ace file of the UniGene biog3_v1.0_unigene54

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene25684	4/5
SustainPine v2.0	sp_v2.0_unigene27320	1/5

Source	Descriptions	Term	Type	e value	Identity
AutoFact	S-adenosyl-L-methionine-dependent methyltransferase-like protein [Arabidopsis thaliana] sp\|Q8LBV4.1\|Y1814_ARATH RecName: Full=Uncharacterized methyltransferase At1g78140, chloroplastic; Flags: Precursor gb\|AAM64539.1\| unknown [Arabidopsis thaliana] gb\|AAO	-	-	2.8026e-45	61%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	94%
Blast2go	uncharacterized methyltransferase chloroplastic-like	-	-	0.0	80%

Source	InterPros	Term	Type	Identity
Sma3	Uncharacterised protein family UPF0434/Trm112	IPR005651	-	-
Sma3	Protein of unknown function DUF597	IPR006734	-	-
Sma3	Methyltransferase type 11	IPR013216	-	-

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LMF8

Fln msg: STOP codon was not found. Distance to subject end: 1 aas, your sequence is shorter than subject: 164 - 326

Fln protein: NVGFNAVYAGEFRMAQKILEPAAGGLLVDASCGSGLFSRRFANSGLYSGVVALDFSENMLRQCYEFIKQDKALSTANLALVRADISRLPFTTGSVDAVHAGAALHCWPSPSSAVAEISRVLRPGGVFVATTFVFSGILDSDIVKPLRQAMQATTTTSYFTERDI

Protein Length: 165

Fln nts: AATGTAGGGTTCAACGCAGTGTACGCGGGGGAGTTCAGAATGGCACAAAAAATTTTGGAGCCTGCTGCAGGGGGTTTGCTGGTTGATGCCAGCTGTGGGAGCGGATTATTTTCCCGACGCTTCGCCAACAGTGGGCTTTATTCGGGGGTAGTGGCTCTTGACTTCTCTGAAAACATGTTGCGCCAGTGCTATGAGTTCATCAAACAGGATAAAGCTCTGTCTACAGCGAACCTAGCTCTGGTTAGGGCGGATATTTCAAGGCTTCCTTTTACAACAGGCTCTGTTGATGCTGTACATGCGGGTGCTGCATTGCACTGTTGGCCATCTCCCTCCTCGGCTGTAGCAGAAATCAGTCGTGTTCTGAGACCTGGTGGTGTGTTTGTGGCAACAACCTTTGTTTTTTCTGGGATCTTAGATTCAGATATTGTGAAGCCATTACGTCAGGCAATGCAAGCGACAACCACCACAAGTTATTTCACAGAAAGAGACATT

Fln Alignment:

Contig54___EFRMAQKILEPAAGGLLVDASCGSGLFSRRFANSGLYSGVVALDFSENMLRQCYEFIKQDKALSTANLALVRADISRLPFTTGSVDAVHAGAALHCWPSPSSAVAEISRVLRPGGVFVATTFVFSGILDSDIVKPLRQAMQ
B8LMF8_______________EFRMAQKILEPAAGGLLVDASCGSGLFSRRFANCGLYSGVVALDFSENMLHQCYEFIKQDKTLSTANLALVRADISRLPFTAGSVDAVHAGAALHCWPSPSSAVAEISRVLRPGGVFVATTFVLSGILDSDIVKPLRQILE

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
301	33		66		1.0
403	33			66	0.997452
427		33		66	0.997452
457	33		66		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain