SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene42

Length: 1510 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene42

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene6956	29/31

Source	Descriptions	Term	Type	e value	Identity
AutoFact	CRAL_TRIO multi-domain protein	-	-	3.0e-11	40%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	92%
Blast2go	polyphosphoinositide binding protein ssh1p	-	-	0.0	79%

Source	GOs	Term	Type	Identity
Blast2go	transport	GO:0006810	Biological Process	79%
Blast2go	transporter activity	GO:0005215	Molecular Function	79%
Blast2go	intracellular	GO:0005622	Cellular Component	79%

Source	InterPros	Term	Type	Identity
Sma3	Cellular retinaldehyde binding/alpha-tocopherol transport	IPR001071	-	-
Sma3	CRAL-TRIO domain	IPR001251	-	-
Sma3		IPR008273	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5AAD5

Fln msg:

Fln protein: MMGHNTSEAIKQMTAFIDGVDEPLKKSFQTMHRGYAQQTLERFLKAREGNVQKANKMLLDCLSWRVQNDIDNILAKPIEPREVYNAVRESQLMGMTGYCKKGRPVFAIGVGLSGYDKASADKYVQSHIQINEYRDQVLLPNASKKYGSYIGPCLKILDMTGLKLSALNRIKILTTIATVDDLNYPEKTETYYIVNAPYVFSACWKVVKPLLQERTRRKVQVLQGCGREELLKVMDYDVLPHFSRQEGSGSSKHRNGKTTDCFSPDHPFHVELYNYIKQQAAIVKPVAPEKMRSFHVDVPEQDDEGTIIVQTLESALHNLGDEEAVENGVANLNVNGDQSLRH*

Protein Length: 344

Fln nts: AATGTGATAAATTTTTGCGTTTAACAGGGCGGCATTTGATTTTTCTGCTTTAAAACGGACATTATAGATCGGTTCGGTTCAGTCTTCTGGATCTCCGCGCTTCGGCCCGCAGAGATCCATGATTAGAAATTCGTCTCCTATATCTCCTGCTTGACGGAAACACTGGAAGTGTGAATTGACGGGAATAAACGAGTATCTAGAGTCTGCTGGTTC_-_ATGATGGGGCACAACACTTCTGAAGCCATCAAACAGATGACCGCTTTCATCGACGGAGTCGACGAGCCATTGAAGAAGTCTTTCCAGACTATGCATCGAGGATATGCACAGCAAACTCTAGAGAGGTTTCTAAAGGCACGGGAAGGGAATGTTCAGAAAGCAAACAAAATGTTGCTAGATTGCTTAAGTTGGAGAGTTCAAAATGACATTGATAACATCTTAGCGAAACCTATAGAACCAAGAGAAGTTTATAATGCTGTTCGAGAATCACAGCTCATGGGGATGACAGGGTACTGCAAAAAGGGACGTCCTGTTTTTGCTATTGGAGTGGGGCTTAGTGGATATGACAAAGCATCTGCTGACAAATATGTGCAGTCACATATACAGATAAATGAGTACCGAGACCAAGTTCTATTGCCAAATGCATCAAAGAAATATGGGAGCTACATTGGACCATGCTTGAAAATCTTGGACATGACGGGGCTGAAACTTTCTGCTTTAAACCGCATTAAGATATTGACTACGATAGCTACAGTTGATGACCTTAATTATCCAGAGAAGACAGAGACATATTATATTGTTAATGCTCCATATGTTTTTTCTGCCTGTTGGAAGGTTGTGAAACCCTTGTTGCAAGAAAGGACTAGACGAAAAGTACAGGTGTTGCAAGGTTGTGGTAGGGAAGAGTTGCTGAAGGTAATGGACTATGATGTTCTTCCTCATTTCAGCAGGCAGGAGGGCTCAGGGTCATCCAAACATCGTAATGGCAAGACGACAGATTGCTTTTCTCCAGATCATCCATTTCATGTAGAACTTTATAATTATATTAAACAGCAAGCAGCGATTGTAAAGCCTGTTGCCCCGGAAAAAATGCGATCTTTTCATGTGGATGTTCCAGAGCAGGATGATGAAGGAACCATTATTGTACAAACTCTAGAATCTGCATTACATAATTTAGGTGATGAAGAGGCAGTTGAGAATGGTGTTGCTAATTTGAATGTCAATGGGGATCAATCTCTGAGACACTGA___AAAGCAGCTAGAAATGAGGTTCAAGGTTGAGCATGCTGAAAGTCGATTGGATATTTAAATAACTGGCCCACATATCTGGAAATCTGAGTTGACAATGTGTGACATTGTGTTGTTATCCTTCAGTATCAGGGTTAATATTGTATACAATTCTCCAGTTTGACAATCTGATCTCAAACTGGTGTTTTGCCTCATTAATGTAATTGCATTAGATTATCTTATTTTGTGGGAGCGGTTGCCACTCCCACATTCTGCAAAATGTCCAAACATT

Fln Alignment:

Contig42___MMGHNTSEAIKQMTAFIDGVDEPLKKSFQTMHRGYAQQTLERFLKAREGNVQKANKMLLDCLSWRVQNDIDNILAKPIEPREVYNAVRESQLMGMTGYCKKGRPVFAIGVGLSGYDKASADKYVQSHIQINEYRDQVLLPNASKKYGSYIGPCLKILDMTGLKLSALNRIKILTTIATVDDLNYPEKTETYYIVNAPYVFSACWKVVKPLLQERTRRKVQVLQGCGREELLKVMDYDVLPHFSRQEGSGSSKHRNGKTTDCFSPDHPFHVELYNYIKQQAAIVKPVAPEKMRSFHVDVPEQDDEGTIIVQTLESALHNLGDEEAVENGVANLNVNGDQSLRH
D5AAD5_______________MMGHSTSDAIKQMKALIDGVDESLKKSFQTMHQGYPQQTLERFLKAREGNVQKANKMLLDCLNWRVQNDIDTILAKPIEPRDVYNAVRESQLMGMTGYCKKGRPVFAIGVGLSGYDKASADKYVQSHIQINEYRDQVLLPNASKKHGSYIGPCLKVLDMTGLKLSALNRIKILTMISTVDDLNYPEKTEIYYIVNAPYVFSACWKVVKPLLQERTRRKIQVLQGCGREELLKVMDYDVLPHFSRHEGSGSSKHNNGKTIDCFSPDHPFHVDLYNYIKQQAVIVKPVAPTKMGSFHVDVPEQDDEGTIIVQTLESTLHNLGDEEAVENGVANLNVNGDQSLRH

SNPs (tot: 25)

Position	A %	C %	G %	T %	Probability
200	10		90		0.90298
201	90			10	0.90298
268	10		90		0.90298
269			90	10	0.90298
270	90			10	0.90298
340	14			85	0.993533
341		14		85	0.993533
342	14			85	0.993533
343		85		14	0.993533
363	20			80	0.995493
364		20	80		0.995493
411	20			80	0.995493
415	80			20	0.995493
416	80			20	0.995493
471	25	50		25	0.995533
472		25		50	0.995533
473	25		75		0.996473
477	20		80		0.995493
552	28		71		1.0
710	14		85		0.993533
712	14			85	0.993533
1443	20		80		0.995493
1444		20		80	0.995493
1446	80			20	0.995493
1460	25			75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain