SustainPineDB

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Assembly info
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SSRs
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GOs
ECs
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Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene31

Length: 299 nt

UniGene Fasta

>biog3_v1.0_unigene31
AATGTCTCATTCAGAAGATTTGCGAAGGGAAAGTTGCAGAATCTAGAGAAAAAGGCATGCCTCTTCCAAAGCTAGAAGACCTTCTTGTTGAACGGACTTGGTTGGATGCACTTCCTGGCGAGCTTCAAAAGCCTTACATGGAAAAGCTTTCAGAGTTCGTGACACAAGAAGCTAGAGGAAGGATTCACATATATCCCCCTCCTGCTTTAATATTCAATTCTTTGAACATATGCCCATTTGACAGAGTTAAGGTTGTCATCATCGGTCAAGATCCTTACCATGGTCCAGGCCAAGCGATG

Ace file of the UniGene biog3_v1.0_unigene31

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene11407	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	Uracil-DNA glycosylase n=1 Tax=Picea sitchensis RepID=D5ADR8_PICSI	-	-	83%
FL-Next	sp=Uracil-DNA glycosylase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	91%
Blast2go	uracil-dna glycosylase	-	-	75%

Source	GOs	Term	Type	Identity
Blast2go	base-excision repair	GO:0006284	Biological Process	75%
Blast2go	uracil DNA N-glycosylase activity	GO:0004844	Molecular Function	75%
Blast2go	plastid	GO:0009536	Cellular Component	75%
Blast2go	mitochondrion	GO:0005739	Cellular Component	75%

Source	InterPros	Term	Type	Identity
Sma3	Uracil-DNA glycosylase	IPR002043	-	-
Sma3	Uracil-DNA glycosylase-like	IPR005122	-	-
Sma3	Uracil-DNA glycosylase, active site	IPR018085	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5ADR8

Fln msg: Distance to subject end: 148 aas, your sequence is shorter than subject: 99 - 378

Fln protein: CLIQKICEGKVAESREKGMPLPKLEDLLVERTWLDALPGELQKPYMEKLSEFVTQEARGRIHIYPPPALIFNSLNICPFDRVKVVIIGQDPYHGPGQAM

Protein Length: 100

Fln nts: AATGTCTCATTCAGAAGATTTGCGAAGGGAAAGTTGCAGAATCTAGAGAAAAAGGCATGCCTCTTCCAAAGCTAGAAGACCTTCTTGTTGAACGGACTTGGTTGGATGCACTTCCTGGCGAGCTTCAAAAGCCTTACATGGAAAAGCTTTCAGAGTTCGTGACACAAGAAGCTAGAGGAAGGATTCACATATATCCCCCTCCTGCTTTAATATTCAATTCTTTGAACATATGCCCATTTGACAGAGTTAAGGTTGTCATCATCGGTCAAGATCCTTACCATGGTCCAGGCCAAGCGATG

Fln Alignment:

Contig31___IQKICEGKVAESREKGMPLPKLEDLLVERTWLDALPGELQKPYMEKLSEFVTQEARGRIHIYPPPALIFNSLNICPFDRVKVVIIGQDPYHGPGQAM
D5ADR8_______________IQKICEEKVAESREKGIPYPKLEDLLVERTWLDALPGELQKPYMEKLSQFVTQEARGTIHIYPPPALVFNALNICPFDKVKVVIIGQDPYHGPGQAM

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain