SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene27

Length: 703 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene27 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene21155	7/7

Source	Descriptions	Term	Type	Identity
AutoFact	Insulinase (Peptidase family M16) protein [Arabidopsis thaliana] dbj\|BAB09891.1\| zinc protease PQQL-like protein [Arabidopsis thaliana] gb\|AED96801.1\| Insulinase (Peptidase family M16) protein [Arabidopsis thaliana]	-	-	64%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	97%
Blast2go	probable zinc protease pqql-like	-	-	76%

Source	GOs	Term	Type	e value	Identity
Blast2go	mitochondrion	GO:0005739	Cellular Component	0.0	76%
Blast2go	chloroplast	GO:0009507	Cellular Component	0.0	76%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase M16, zinc-binding site	IPR001431	-	-
Sma3	Peptidase M16, C-terminal	IPR007863	-	-
Sma3	Peptidase M16, core	IPR011237	-	-
Sma3	Peptidase M16, N-terminal	IPR011765	-	-

Full-Lengther Next Prediction

SNPs (tot: 12)

Position	A %	C %	G %	T %	Probability
199		75		25	0.996473
265	83		16		0.994512
266	83			16	0.994512
367	14		85		0.993533
368	14	85			0.993533
370		85	14		0.993533
371	85			14	0.993533
431	12	87			0.992554
507	25			75	0.996473
508		25		75	0.996473
510	75			25	0.996473
511			75	25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain