Sustainpine_db
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Assembly Name: SustainPine v1.1

Name: ribonucleoprotein complex

Term: GO:0030529  Help

Source: GO from Blast2go

Ontology: Cellular Component


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v1.1_unigene885 SustainPine v1.1 2192
AutoFact: Signal recognition particle 54 kDa protein 2 n=8 Tax=Magnoliophyta RepID=SR542_SOLLC 0.0
FL-Next: sp=Signal recognition particle 54 kDa protein 2; Solanum lycopersicum (Tomato) (Lycopersicon esculentum). 0.0
Blast2go: signal recognition particle 54 kda subunit 0.0
Complete
sp_v1.1_unigene889 SustainPine v1.1 2758
AutoFact: polyadenylate-binding protein, putative 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: poly binding cytoplasmic 1 0.0
Complete
sp_v1.1_unigene5132 SustainPine v1.1 1190
AutoFact: 30S ribosomal protein S10, putative n=1 Tax=Ricinus communis RepID=B9S9Q5_RICCO 3.9937e-43
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: chloroplast 30s ribosomal protein s10 0.0
Complete
sp_v1.1_unigene6213 SustainPine v1.1 1002
AutoFact: Ribosomal protein S13 n=1 Tax=Cycas taitungensis RepID=B0BLG5_CYCTA 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: ribosomal protein s13 0.0
Putative Complete
sp_v1.1_unigene6915 SustainPine v1.1 1745
AutoFact: HNRNPR, HNRPR; heterogeneous nuclear ribonucleoprotein R; K13161 heterogeneous nuclear ribonucleoprotein R 4.0e-20
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: heterogeneous nuclear ribonucleoprotein r 0.0
Complete
sp_v1.1_unigene6940 SustainPine v1.1 1377
AutoFact: 50S ribosomal protein L15, putative n=1 Tax=Ricinus communis RepID=B9T052_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
Complete
sp_v1.1_unigene13542 SustainPine v1.1 741
AutoFact: [R] COG0724 RNA-binding proteins (RRM domain) 4.2039e-45
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: heterogeneous nuclear ribonucleoprotein 0.0
N-terminus
sp_v1.1_unigene14594 SustainPine v1.1 553
AutoFact: CAF1; CAF1; RNA splicing factor, transesterification mechanism 5.0e-30
FL-Next: sp=CRS2-associated factor 1, chloroplastic; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: crs2-associated factor 1 1.70395e-40
Internal
sp_v1.1_unigene15861 SustainPine v1.1 1041
AutoFact: H/ACA ribonucleoprotein complex subunit, putative; K11129 H/ACA ribonucleoprotein complex subunit 2 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: nucleolar protein family a member 2 0.0
Complete
sp_v1.1_unigene15939 SustainPine v1.1 1276
AutoFact: Arginine/serine-rich-splicing factor, putative n=1 Tax=Ricinus communis RepID=B9SXC4_RICCO 4.0e-38
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
Complete
sp_v1.1_unigene16484 SustainPine v1.1 3504
AutoFact: Whole genome shotgun sequence of line PN40024, scaffold_21.assembly12x (Fragment) n=2 Tax=Vitis vinifera RepID=D7SM13_VITVI 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: rna binding 0.0
Complete
sp_v1.1_unigene16536 SustainPine v1.1 1284
AutoFact: Heterogeneous nuclear ribonucleoprotein A1, putative 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: rna recognition motif -containing protein 0.0
N-terminus
sp_v1.1_unigene16599 SustainPine v1.1 843
AutoFact: RRM_1 domain containing protein 5.0e-08
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: rna binding protein 0.0
C-terminus
sp_v1.1_unigene16719 SustainPine v1.1 1563
AutoFact: Os07g0631900 protein n=2 Tax=Oryza sativa RepID=Q8LHN4_ORYSJ 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: ribonucleoprotein a 0.0
Complete
sp_v1.1_unigene17236 SustainPine v1.1 1304
AutoFact: U1 small nuclear ribonucleoprotein 70 kDa, putative; K11093 U1 small nuclear ribonucleoprotein 70kDa 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: u1 snrnp 70k protein 0.0
N-terminus
sp_v1.1_unigene17372 SustainPine v1.1 1198
AutoFact: U2B''; U2B'' (U2 small nuclear ribonucleoprotein B); RNA binding / nucleic acid binding / nucleotide binding; K11094 U2 small nuclear ribonucleoprotein B'' 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: spliceosomal protein 0.0
Complete
sp_v1.1_unigene17409 SustainPine v1.1 1378
AutoFact: ribonucleoprotein, chloroplast, putative 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: plastid-specific ribosomal protein 2 precursor 0.0
Complete
sp_v1.1_unigene17515 SustainPine v1.1 1574
AutoFact: hnrnpul1, hnrpul1, wu:fb53d10, wu:fk45c03, zgc:85971; heterogeneous nuclear ribonucleoprotein U-like 1 0.0
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: heterogeneous nuclear ribonucleoprotein u-like protein 1 0.0
N-terminus
sp_v1.1_unigene18282 SustainPine v1.1 820
AutoFact: protein kinase family protein / peptidoglycan-binding LysM domain-containing protein 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
Internal
sp_v1.1_unigene19500 SustainPine v1.1 436
AutoFact: U4/U6 small nuclear ribonucleoprotein Prp31, putative 4.0e-34
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: u4 u6 small nuclear ribonucleoprotein 4.59868e-35
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain