Sustainpine_db
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Assembly Name: SustainPine v1.1

Name: RNA recognition motif domain

Term: IPR000504  Help

Source: InterPro from Blast2go

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v1.1_unigene28439 SustainPine v1.1 2903
• AutoFact: RNA-binding protein, putative 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: protein 0.0
C-terminus
sp_v1.1_unigene28649 SustainPine v1.1 1082
• AutoFact: RNA-binding protein, putative 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: rna-binding protein 0.0
N-terminus
sp_v1.1_unigene28655 SustainPine v1.1 1883
• AutoFact: Whole genome shotgun sequence of line PN40024, scaffold_68.assembly12x (Fragment) n=1 Tax=Vitis vinifera RepID=D7SVC9_VITVI 3.0e-28
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: protein 9.22596e-39
Putative Complete
sp_v1.1_unigene28968 SustainPine v1.1 1571
• AutoFact: RNA binding protein, putative 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: nucleic acid binding nucleotide binding 0.0
C-terminus
sp_v1.1_unigene29304 SustainPine v1.1 2554
• AutoFact: glycine-rich RNA-binding protein, putative 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: glycine-rich rna-binding 0.0
Complete
sp_v1.1_unigene29546 SustainPine v1.1 1127
• AutoFact: SAP DNA-binding domain-containing protein n=1 Tax=Dictyostelium discoideum RepID=Q54WI5_DICDI 9.0e-16
• FL-Next: tr=Putative uncharacterized protein; Chlorella variabilis. 0.0
• Blast2go: sap dna-binding domain-containing protein 1.59616e-15
Internal
sp_v1.1_unigene29720 SustainPine v1.1 617
• AutoFact: RNA recognition motif (RRM)-containing protein 7.0e-27
• FL-Next: tr=Os02g0138200 protein; Oryza sativa subsp. japonica (Rice). 0.0
• Blast2go: rna recognition motif -containing 1.26359e-30
N-terminus
sp_v1.1_unigene29879 SustainPine v1.1 1813
• AutoFact: U1 small nuclear ribonucleoprotein 70 kDa, putative n=1 Tax=Ricinus communis RepID=B9S6I9_RICCO 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: u1 snrnp 70k protein 0.0
N-terminus
sp_v1.1_unigene30449 SustainPine v1.1 477
• AutoFact: RNA-binding protein, putative 4.06377e-44
• FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
• Blast2go: rna recognition motif-containing protein 0.0
Internal
sp_v1.1_unigene30564 SustainPine v1.1 697
• AutoFact: RNA recognition motif (RRM)-containing protein 3.0e-37
• FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
• Blast2go: rna recognition motif-containing protein 1.97429e-39
Internal
sp_v1.1_unigene31637 SustainPine v1.1 1768
• AutoFact: U2 snrnp auxiliary factor, small subunit, putative; K12836 splicing factor U2AF 35 kDa subunit 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: u2 snrnp auxiliary small 0.0
Complete
sp_v1.1_unigene31891 SustainPine v1.1 1006
• AutoFact: U2B''; U2B'' (U2 small nuclear ribonucleoprotein B); RNA binding / nucleic acid binding / nucleotide binding; K11094 U2 small nuclear ribonucleoprotein B'' 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: spliceosomal protein 0.0
Putative Complete
sp_v1.1_unigene32506 SustainPine v1.1 1562
• AutoFact: pco079325; LOC100192580; K03248 translation initiation factor eIF-3 subunit 4 0.0
• FL-Next: sp=Eukaryotic translation initiation factor 3 subunit G; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: initiation factor 3g 0.0
Complete
sp_v1.1_unigene32656 SustainPine v1.1 673
• AutoFact: RNA binding protein, putative 3.0e-31
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: protein 0.0
Internal
sp_v1.1_unigene33091 SustainPine v1.1 622
• AutoFact: Flowering time control protein FCA, putative 1.0e-15
• FL-Next: Isoform Delta of Flowering time control protein FCA OS=Arabidopsis thaliana GN=FCA 0.0
• Blast2go: protein 9.62132e-18
Internal
sp_v1.1_unigene33722 SustainPine v1.1 556
• AutoFact: RNA-binding protein, putative 9.99995e-41
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: protein 4.58477e-41
Putative Complete
sp_v1.1_unigene33832 SustainPine v1.1 1643
• AutoFact: Splicing factor-like protein n=3 Tax=Vitis RepID=Q6R4Q7_VITRI 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: splicing factor at-srp40 0.0
Putative Complete
sp_v1.1_unigene34805 SustainPine v1.1 1935
• AutoFact: RNA-binding protein AKIP1-like n=1 Tax=Solanum tuberosum RepID=Q2V9B8_SOLTU 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: protein 0.0
Complete
sp_v1.1_unigene35294 SustainPine v1.1 1199
• AutoFact: RNA binding protein n=3 Tax=Andropogoneae RepID=B6TN55_MAIZE 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: rna binding protein 0.0
Putative C-terminus
sp_v1.1_unigene36721 SustainPine v1.1 565
• AutoFact: SR1; SR1; RNA binding / nucleic acid binding / nucleotide binding; K12890 splicing factor, arginine/serine-rich 1/9 2.0e-38
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: protein 4.27676e-42
N-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain