Sustainpine_db
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Assembly Name: SustainPine v1.1

Name: RNA recognition motif domain

Term: IPR000504  Help

Source: InterPro from Blast2go

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v1.1_unigene21866 SustainPine v1.1 1569
• AutoFact: arginine/serine-rich splicing factor, putative 9.0e-29
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: arginine serine-rich splicing 7.28629e-31
Complete
sp_v1.1_unigene22088 SustainPine v1.1 2166
• AutoFact: nuclear acid binding protein, putative 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: protein 0.0
Complete
sp_v1.1_unigene22289 SustainPine v1.1 492
• AutoFact: Putative galactosyltransferase n=1 Tax=Oryza sativa Japonica Group RepID=Q75HQ8_ORYSJ 2.0e-23
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: rna recognition motif-containing protein 1.77255e-26
N-terminus
sp_v1.1_unigene22854 SustainPine v1.1 1962
• AutoFact: RNA-binding protein AKIP1-like n=1 Tax=Solanum tuberosum RepID=Q2V9B8_SOLTU 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: protein 0.0
Complete
sp_v1.1_unigene22895 SustainPine v1.1 2304
• AutoFact: [R] COG0724 RNA-binding proteins (RRM domain) 4.0e-19
• FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
• Blast2go: protein 0.0
Complete
sp_v1.1_unigene22975 SustainPine v1.1 1097
• AutoFact: Nucleic acid binding protein, putative n=1 Tax=Ricinus communis RepID=B9RQ14_RICCO 5.0e-27
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: protein 0.0
Putative Complete
sp_v1.1_unigene23014 SustainPine v1.1 1919
• AutoFact: [R] COG0724 RNA-binding proteins (RRM domain) 1.0e-19
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: heterogeneous nuclear ribonucleoprotein 0.0
Complete
sp_v1.1_unigene23316 SustainPine v1.1 2111
• AutoFact: nuclear transport factor 2 (NTF2) family protein / RNA recognition motif (RRM)-containing protein [Arabidopsis thaliana] dbj|BAB09056.1| unnamed protein product [Arabidopsis thaliana] gb|AAL86001.1| unknown protein [Arabidopsis thaliana] gb|AAM45065.1| un 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: ras-gtpase-activating protein-binding 0.0
Complete
sp_v1.1_unigene23484 SustainPine v1.1 1430
• AutoFact: serine/arginine rich splicing factor, putative; K12891 splicing factor, arginine/serine-rich 2 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: protein 0.0
Complete
sp_v1.1_unigene23527 SustainPine v1.1 2307
• AutoFact: Eukaryotic translation initiation factor 3 subunit, putative; K03253 translation initiation factor eIF-3 subunit 9 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: protein 0.0
C-terminus
sp_v1.1_unigene23575 SustainPine v1.1 599
• AutoFact: Polypyrimidine tract-binding protein homolog 3 n=4 Tax=Arabidopsis RepID=PTBP3_ARATH 6.0e-34
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: polypyrimidine tract-binding heterogeneous nuclear 1.00893e-42
N-terminus
sp_v1.1_unigene23725 SustainPine v1.1 1354
• AutoFact: poly-A binding protein, putative 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: protein 0.0
Complete
sp_v1.1_unigene23734 SustainPine v1.1 1529
• AutoFact: Glycine-rich RNA-binding protein n=4 Tax=Pinaceae RepID=Q9XEL4_PICGL 4.0e-37
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: glycine-rich rna binding protein 3.38372e-41
Complete
sp_v1.1_unigene23790 SustainPine v1.1 2325
• AutoFact: syncrip, gry-rbp, hnrpq1, nsap1, pp68, rp1-3j17.2; synaptotagmin binding, cytoplasmic RNA interacting protein 1.0e-31
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: rna recognition motif family expressed 0.0
Complete
sp_v1.1_unigene23805 SustainPine v1.1 2613
• AutoFact: zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein [Arabidopsis thaliana] sp|Q9SJ41.1|C3H18_ARATH RecName: Full=Zinc finger CCCH domain-containing protein 18; Short=AtC3H18 gb|AAD29054.1| hypothetical protein [Arabidop 0.0
• FL-Next: sp=Zinc finger CCCH domain-containing protein 18; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Blast2go: rna binding 0.0
Complete
sp_v1.1_unigene23885 SustainPine v1.1 1714
• AutoFact: [R] COG0724 RNA-binding proteins (RRM domain) 2.0e-24
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: protein 0.0
Complete
sp_v1.1_unigene23969 SustainPine v1.1 902
• AutoFact: Heterogeneous nuclear ribonucleoprotein 27C, putative n=1 Tax=Ricinus communis RepID=B9SQV8_RICCO 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: heterogeneous nuclear ribonucleoprotein 0.0
N-terminus
sp_v1.1_unigene24027 SustainPine v1.1 735
• AutoFact: [R] COG0724 RNA-binding proteins (RRM domain) 3.0e-18
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: protein 1.25232e-34
N-terminus
sp_v1.1_unigene24182 SustainPine v1.1 1576
• AutoFact: RNA-binding protein, putative 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: nucleic acid binding nucleotide binding 0.0
Putative Complete
sp_v1.1_unigene24217 SustainPine v1.1 1607
• AutoFact: Putative galactosyltransferase n=1 Tax=Oryza sativa Japonica Group RepID=Q75HQ8_ORYSJ 3.0e-33
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: rna recognition motif-containing protein 0.0
Complete

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain