Sustainpine_db
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Assembly Name: SustainPine v1.1

Name: RNA recognition motif domain

Term: IPR000504  Help

Source: InterPro from Blast2go

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v1.1_unigene15495 SustainPine v1.1 1573
• AutoFact: Nucleic acid binding protein, putative n=1 Tax=Ricinus communis RepID=B9S290_RICCO 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: nucleic acid binding 0.0
Complete
sp_v1.1_unigene15543 SustainPine v1.1 1208
• AutoFact: nucleic acid binding protein, putative; K11294 nucleolin 2.0e-37
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: nucleic acid binding 3.37713e-43
Putative Complete
sp_v1.1_unigene15555 SustainPine v1.1 2050
• AutoFact: polypyrimidine tract-binding protein, putative / heterogeneous nuclear ribonucleoprotein, putative 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: polypyrimidine tract-binding heterogeneous nuclear 0.0
Complete
sp_v1.1_unigene15616 SustainPine v1.1 2171
• AutoFact: [R] COG0724 RNA-binding proteins (RRM domain) 2.0e-19
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: protein 0.0
Complete
sp_v1.1_unigene15721 SustainPine v1.1 1876
• AutoFact: Nucleic acid binding protein, putative n=1 Tax=Ricinus communis RepID=B9RQ14_RICCO 3.0e-37
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: protein 0.0
Complete
sp_v1.1_unigene15844 SustainPine v1.1 1397
• AutoFact: RNA-binding protein, putative 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: protein 0.0
C-terminus
sp_v1.1_unigene15939 SustainPine v1.1 1276
• AutoFact: Arginine/serine-rich-splicing factor, putative n=1 Tax=Ricinus communis RepID=B9SXC4_RICCO 4.0e-38
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: protein 0.0
Complete
sp_v1.1_unigene16021 SustainPine v1.1 1116
• AutoFact: RNA binding protein, putative 6.0e-32
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: rna binding 0.0
Complete
sp_v1.1_unigene16244 SustainPine v1.1 1158
• AutoFact: nbp1, NBP; nucleic acid binding protein1 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: nucleic acid-binding protein 0.0
C-terminus
sp_v1.1_unigene16301 SustainPine v1.1 1630
• AutoFact: [R] COG0724 RNA-binding proteins (RRM domain) 9.94922e-44
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: heterogeneous nuclear ribonucleoprotein 0.0
Complete
sp_v1.1_unigene16393 SustainPine v1.1 1421
• AutoFact: RRM_1 domain containing protein 3.0e-07
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: heterogeneous nuclear 0.0
Complete
sp_v1.1_unigene16536 SustainPine v1.1 1284
• AutoFact: Heterogeneous nuclear ribonucleoprotein A1, putative 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: rna recognition motif -containing protein 0.0
N-terminus
sp_v1.1_unigene16543 SustainPine v1.1 2116
• AutoFact: Heterogeneous nuclear ribonucleoprotein A3-like protein 2 n=3 Tax=Andropogoneae RepID=B6TV58_MAIZE 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: heterogeneous nuclear ribonucleoprotein a3-like protein 2 0.0
Complete
sp_v1.1_unigene16629 SustainPine v1.1 1057
• AutoFact: serine/arginine rich splicing factor, putative; K12891 splicing factor, arginine/serine-rich 2 4.0e-25
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: serine arginine rich splicing 7.81197e-30
C-terminus
sp_v1.1_unigene16719 SustainPine v1.1 1563
• AutoFact: Os07g0631900 protein n=2 Tax=Oryza sativa RepID=Q8LHN4_ORYSJ 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: ribonucleoprotein a 0.0
Complete
sp_v1.1_unigene16812 SustainPine v1.1 681
• AutoFact: RNA-binding protein n=1 Tax=Nicotiana tabacum RepID=Q941H9_TOBAC 1.0e-23
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: glycine-rich rna-binding 2.44899e-23
N-terminus
sp_v1.1_unigene17028 SustainPine v1.1 1591
• AutoFact: arginine/serine-rich splicing factor, putative 1.0e-28
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: arginine serine-rich splicing 7.39358e-31
Complete
sp_v1.1_unigene17139 SustainPine v1.1 1472
• AutoFact: arginine/serine-rich splicing factor, putative 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: arginine serine-rich splicing 0.0
Complete
sp_v1.1_unigene17236 SustainPine v1.1 1304
• AutoFact: U1 small nuclear ribonucleoprotein 70 kDa, putative; K11093 U1 small nuclear ribonucleoprotein 70kDa 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: u1 snrnp 70k protein 0.0
N-terminus
sp_v1.1_unigene17372 SustainPine v1.1 1198
• AutoFact: U2B''; U2B'' (U2 small nuclear ribonucleoprotein B); RNA binding / nucleic acid binding / nucleotide binding; K11094 U2 small nuclear ribonucleoprotein B'' 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: spliceosomal protein 0.0
Complete

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain