Sustainpine_db
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Assembly Name: SustainPine v1.1

Name: RNA recognition motif domain

Term: IPR000504  Help

Source: InterPro from Blast2go

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v1.1_unigene11148 SustainPine v1.1 957
• AutoFact: [R] COG0724 RNA-binding proteins (RRM domain) 4.0e-38
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: protein 0.0
N-terminus
sp_v1.1_unigene11360 SustainPine v1.1 601
• AutoFact: nbp1, NBP; nucleic acid binding protein1 1.0e-13
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: nucleic acid-binding protein 6.82567e-39
C-terminus
sp_v1.1_unigene11531 SustainPine v1.1 1420
• AutoFact: RNA recognition motif-containing protein, putative n=1 Tax=Ricinus communis RepID=B9SU08_RICCO 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: protein 0.0
N-terminus
sp_v1.1_unigene12854 SustainPine v1.1 1283
• AutoFact: GR-RBP3 (glycine-rich RNA-binding protein 3); ATP binding / RNA binding 1.0e-32
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: at5g61030 maf19_30 0.0
Complete
sp_v1.1_unigene13326 SustainPine v1.1 2220
• AutoFact: splicing factor, putative; K13091 RNA-binding protein 39 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: splicing factor 0.0
Complete
sp_v1.1_unigene13542 SustainPine v1.1 741
• AutoFact: [R] COG0724 RNA-binding proteins (RRM domain) 4.2039e-45
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: heterogeneous nuclear ribonucleoprotein 0.0
N-terminus
sp_v1.1_unigene14012 SustainPine v1.1 604
• AutoFact: RNA binding / nucleic acid binding / nucleotide binding 2.0e-29
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: protein 8.76147e-34
Internal
sp_v1.1_unigene14406 SustainPine v1.1 868
• AutoFact: RNA binding protein, putative 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: rna binding 0.0
Internal
sp_v1.1_unigene14534 SustainPine v1.1 1880
• AutoFact: Splicing factor-like protein n=3 Tax=Vitis RepID=Q6R4Q7_VITRI 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: atrsp41 rna binding nucleic acid binding nucleotide binding 0.0
Putative Complete
sp_v1.1_unigene14591 SustainPine v1.1 840
• AutoFact: splicing factor u2af large subunit, putative 2.0e-31
• FL-Next: sp=Splicing factor U2af large subunit A; Nicotiana plumbaginifolia (Leadwort-leaved tobacco) (Tex-Mex tobacco). 0.0
• Blast2go: rna recognition motif family expressed 2.82378e-39
Putative C-terminus
sp_v1.1_unigene14697 SustainPine v1.1 971
• AutoFact: polypyrimidine tract binding protein, putative (EC:1.3.1.74) 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: polypyrimidine tract binding 0.0
N-terminus
sp_v1.1_unigene14770 SustainPine v1.1 1475
• AutoFact: nuclear acid binding protein, putative 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: protein 0.0
N-terminus
sp_v1.1_unigene14821 SustainPine v1.1 1856
• AutoFact: ATRZ-1A; RNA binding / nucleotide binding 5.0e-35
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: protein 0.0
Complete
sp_v1.1_unigene14858 SustainPine v1.1 2026
• AutoFact: U2 snrnp auxiliary factor, small subunit, putative n=1 Tax=Ricinus communis RepID=B9SRG2_RICCO 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: u2 snrnp auxiliary small 0.0
Complete
sp_v1.1_unigene15031 SustainPine v1.1 1093
• AutoFact: glycine-rich RNA-binding protein, putative 5.0e-31
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: rna binding protein 0.0
Complete
sp_v1.1_unigene15046 SustainPine v1.1 1360
• AutoFact: nuclear acid binding protein, putative 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: protein 0.0
C-terminus
sp_v1.1_unigene15103 SustainPine v1.1 1338
• AutoFact: Heterogeneous nuclear ribonucleoprotein A3-like protein 2 n=3 Tax=Andropogoneae RepID=B6TV58_MAIZE 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: heterogeneous nuclear ribonucleoprotein a3-like protein 2 0.0
N-terminus
sp_v1.1_unigene15262 SustainPine v1.1 2011
• AutoFact: RNA-binding protein, putative 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: protein 0.0
Complete
sp_v1.1_unigene15434 SustainPine v1.1 639
• AutoFact: Pre-mRNA branch site protein p14, putative; K12833 pre-mRNA branch site protein p14 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: pre-mrna branch site p14-like protein 0.0
Complete
sp_v1.1_unigene15440 SustainPine v1.1 2706
• AutoFact: Heterogeneous nuclear ribonucleoprotein 27C, putative n=1 Tax=Ricinus communis RepID=B9SQV8_RICCO 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: heterogeneous nuclear ribonucleoprotein 0.0
Complete

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain