Sustainpine_db
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Assembly Name: SustainPine v1.1

Name: RNA recognition motif domain

Term: IPR000504  Help

Source: InterPro from Blast2go


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v1.1_unigene67392 SustainPine v1.1 212
AutoFact: Whole genome shotgun sequence of line PN40024, scaffold_21.assembly12x (Fragment) n=2 Tax=Vitis vinifera RepID=D7SM13_VITVI 2.0e-15
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: rna binding 4.10107e-15
N-terminus
sp_v1.1_unigene68852 SustainPine v1.1 515
AutoFact: nucleic acid binding protein, putative 1.0e-22
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
Putative C-terminus
sp_v1.1_unigene69862 SustainPine v1.1 493
AutoFact: DNA binding protein ACBF-like n=1 Tax=Solanum tuberosum RepID=Q2V9A1_SOLTU 1.0e-36
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: nuclear acid binding 4.54188e-38
Internal
sp_v1.1_unigene75197 SustainPine v1.1 425
AutoFact: RNA recognition motif (RRM)-containing protein [Arabidopsis thaliana] gb|AAK93596.1| unknown protein [Arabidopsis thaliana] gb|AAM14356.1| unknown protein [Arabidopsis thaliana] 1.0e-17
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: nucleic acid binding 2.35009e-34
N-terminus
sp_v1.1_unigene76012 SustainPine v1.1 656
AutoFact: glycine-rich RNA-binding protein, putative 6.0e-30
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 2.51443e-30
N-terminus
sp_v1.1_unigene76097 SustainPine v1.1 633
AutoFact: serine/arginine rich splicing factor, putative 5.0e-10
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: pre-mrna splicing factor 3.82095e-17
N-terminus
sp_v1.1_unigene76357 SustainPine v1.1 382
AutoFact: similar to splicing factor-like protein 4.0e-09
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: unknown [Picea sitchensis] 1.24528e-11
N-terminus
sp_v1.1_unigene76562 SustainPine v1.1 556
AutoFact: CP33; CP33; RNA binding 1.0e-06
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: unknown [Picea sitchensis] 6.15352e-18
C-terminus
sp_v1.1_unigene76675 SustainPine v1.1 401
AutoFact: arginine/serine-rich splicing factor RSP41 1.0e-09
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: unknown [Picea sitchensis] 5.10034e-13
N-terminus
sp_v1.1_unigene76726 SustainPine v1.1 923
AutoFact: [R] COG0724 RNA-binding proteins (RRM domain) 6.0e-18
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: heterogeneous nuclear ribonucleoprotein 0.0
Putative C-terminus
sp_v1.1_unigene77469 SustainPine v1.1 500
AutoFact: RNA recognition motif (RRM)-containing protein [Arabidopsis thaliana] gb|AAK93596.1| unknown protein [Arabidopsis thaliana] gb|AAM14356.1| unknown protein [Arabidopsis thaliana] 1.0e-15
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: nucleic acid binding 8.22034e-32
N-terminus
sp_v1.1_unigene77473 SustainPine v1.1 822
AutoFact: serine/arginine rich splicing factor, putative; K12891 splicing factor, arginine/serine-rich 2 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
N-terminus
sp_v1.1_unigene78307 SustainPine v1.1 509
AutoFact: [R] COG0724 RNA-binding proteins (RRM domain) 1.0e-18
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 4.87312e-35
N-terminus
sp_v1.1_unigene78548 SustainPine v1.1 491
AutoFact: RNA recognition motif (RRM)-containing protein [Arabidopsis thaliana] gb|AAK93596.1| unknown protein [Arabidopsis thaliana] gb|AAM14356.1| unknown protein [Arabidopsis thaliana] 1.0e-17
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: nucleic acid binding 2.34335e-34
N-terminus
sp_v1.1_unigene78567 SustainPine v1.1 536
AutoFact: polyadenylate-binding protein, putative 2.0e-25
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 2.30002e-28
N-terminus
sp_v1.1_unigene78972 SustainPine v1.1 563
AutoFact: [R] COG0724 RNA-binding proteins (RRM domain) 8.0e-20
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 1.56212e-36
N-terminus
sp_v1.1_unigene79062 SustainPine v1.1 348
AutoFact: RSZ32; zinc knuckle (CCHC-type) family protein 6.0e-28
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: splicing factor 2.49776e-34
N-terminus
sp_v1.1_unigene79171 SustainPine v1.1 403
AutoFact: RNA recognition motif (RRM)-containing protein [Arabidopsis thaliana] gb|AAK93596.1| unknown protein [Arabidopsis thaliana] gb|AAM14356.1| unknown protein [Arabidopsis thaliana] 4.0e-14
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: nucleic acid binding 2.68092e-30
N-terminus
sp_v1.1_unigene79422 SustainPine v1.1 956
AutoFact: nuclear acid binding protein, putative 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
C-terminus
sp_v1.1_unigene79466 SustainPine v1.1 514
AutoFact: [R] COG0724 RNA-binding proteins (RRM domain) 1.0e-09
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
Putative N-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain