Sustainpine_db
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Assembly Name: SustainPine v1.1

Name: RNA binding

Term: GO:0003723  Help

Source: GO from Blast2go

Ontology: Molecular Function


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v1.1_unigene667 SustainPine v1.1 1851
AutoFact: CPSF30; CPSF30; RNA binding / calmodulin binding / endonuclease/ nucleic acid binding / protein binding 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: c-x8-c-x5-c-x3-h type zn-finger 0.0
Putative N-terminus
sp_v1.1_unigene761 SustainPine v1.1 2134
AutoFact: FHA multi-domain protein 2.0e-14
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: nuclear inhibitor of protein phosphatase- 0.0
Complete
sp_v1.1_unigene885 SustainPine v1.1 2192
AutoFact: Signal recognition particle 54 kDa protein 2 n=8 Tax=Magnoliophyta RepID=SR542_SOLLC 0.0
FL-Next: sp=Signal recognition particle 54 kDa protein 2; Solanum lycopersicum (Tomato) (Lycopersicon esculentum). 0.0
Blast2go: signal recognition particle 54 kda subunit 0.0
Complete
sp_v1.1_unigene1019 SustainPine v1.1 1701
AutoFact: AtLa1; AtLa1 (Arabidopsis thaliana La protein 1); RNA binding; K11090 lupus La protein 0.0
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: protein 0.0
Complete
sp_v1.1_unigene2063 SustainPine v1.1 1914
AutoFact: Double-stranded RNA binding protein (Fragment) n=1 Tax=Physcomitrella patens subsp. patens RepID=A9TW99_PHYPA 1.0e-24
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: dsrna-binding protein 5.32587e-26
Putative Complete
sp_v1.1_unigene2208 SustainPine v1.1 3484
AutoFact: DEAD box RNA helicase (RH26) 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: rna helicase 0.0
Putative Complete
sp_v1.1_unigene2995 SustainPine v1.1 777
AutoFact: zinc finger (CCCH-type) family protein 5.0e-37
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: ccch-type zinc finger protein 4.60281e-38
Internal
sp_v1.1_unigene3197 SustainPine v1.1 1013
AutoFact: nufip1, MGC154944, nufip; nuclear fragile X mental retardation protein interacting protein 1 6.0e-14
FL-Next: tr=Predicted protein; Physcomitrella patens subsp. patens (Moss). 0.0
Blast2go: nuclear fragile x mental retardation protein interacting protein 1 6.19253e-37
Internal
sp_v1.1_unigene4969 SustainPine v1.1 573
AutoFact: YTH domain containing protein 7.0e-19
FL-Next: sp=Cleavage and polyadenylation specificity factor CPSF30; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: protein 0.0
Internal
sp_v1.1_unigene5445 SustainPine v1.1 2165
AutoFact: RNA-binding protein, putative 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: rna-binding protein 0.0
Complete
sp_v1.1_unigene7472 SustainPine v1.1 2836
AutoFact: HUA1; HUA1 (ENHANCER OF AG-4 1); RNA binding 0.0
FL-Next: sp=Zinc finger CCCH domain-containing protein 37; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: protein 0.0
Complete
sp_v1.1_unigene10183 SustainPine v1.1 615
AutoFact: tRNA pseudouridine synthase family protein n=3 Tax=Andropogoneae RepID=B6TLN6_MAIZE 2.0e-20
FL-Next: sp=Pseudouridine synthase; Vitis vinifera (Grape). 0.0
Blast2go: trna pseudouridine synthase family protein 1.42915e-20
C-terminus
sp_v1.1_unigene10316 SustainPine v1.1 1021
AutoFact: prephenate dehydratase, putative (EC:4.2.1.51) 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
C-terminus
sp_v1.1_unigene10582 SustainPine v1.1 765
AutoFact: splicing factor-related; K13095 splicing factor 1 3.0e-20
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 4.93494e-29
Internal
sp_v1.1_unigene10677 SustainPine v1.1 1108
AutoFact: ATP-dependent RNA helicase, putative; K12818 ATP-dependent RNA helicase DHX8/PRP22 [EC:3.6.4.13] 1.0e-31
FL-Next: sp=Probable pre-mRNA-splicing factor ATP-dependent RNA helicase; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: atp-dependent rna 4.61147e-36
N-terminus
sp_v1.1_unigene10682 SustainPine v1.1 898
AutoFact: APUM24; APUM24 (Arabidopsis Pumilio 24); RNA binding / binding 4.0e-27
FL-Next: sp=Pumilio homolog 24; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: protein 5.59761e-28
N-terminus
sp_v1.1_unigene10719 SustainPine v1.1 1368
AutoFact: PREDICTED: similar to RNA binding / translation initiation factor n=1 Tax=Vitis vinifera RepID=UPI000198501E 3.0e-34
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: rna binding protein 0.0
Complete
sp_v1.1_unigene10785 SustainPine v1.1 1413
AutoFact: Flowering time control protein FCA, putative n=1 Tax=Ricinus communis RepID=B9RZT3_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: fca gamma 0.0
Putative Complete
sp_v1.1_unigene10871 SustainPine v1.1 1036
AutoFact: alphavirus core protein family 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
C-terminus
sp_v1.1_unigene10913 SustainPine v1.1 512
AutoFact: RNA-binding protein n=1 Tax=Nicotiana tabacum RepID=Q941H9_TOBAC 9.0e-24
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: glycine-rich rna-binding 4.38534e-27
N-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain