Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: predicted protein, partial [Populus trichocarpa]

Source: Ref_annotation from RefSeq

Species: Populus trichocarpa

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v3.0_unigene27377 SustainPine v3.0 511
• AutoFact: 40S ribosomal protein S24 (Fragment) n=1 Tax=Ostreococcus lucimarinus CCE9901 RepID=A4S7Q6_OSTLU 4.0e-29
• FL-Next: sp=40S ribosomal protein S24; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S24 0.0
Complete
sp_v3.0_unigene31095 SustainPine v3.0 441
• AutoFact: 40S ribosomal protein S24 n=5 Tax=Physcomitrella patens subsp. patens RepID=A9U2W2_PHYPA 6.0e-38
• FL-Next: sp=40S ribosomal protein S24; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S24 0.0
Complete
sp_v3.0_unigene31371 SustainPine v3.0 441
• AutoFact: 40s ribosomal protein s24 (Fragment) n=3 Tax=Cryptosporidium RepID=Q5CPN5_CRYPV 2.0e-37
• FL-Next: sp=40S ribosomal protein S24; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S24 0.0
Complete
sp_v3.0_unigene35690 SustainPine v3.0 837
• AutoFact: 40S ribosomal protein S24 n=2 Tax=Picea sitchensis RepID=A9NKN3_PICSI 0.0
• FL-Next: sp=40S ribosomal protein S24; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S24 0.0
Complete
sp_v3.0_unigene35928 SustainPine v3.0 469
• AutoFact: PREDICTED: similar to ribosomal protein S24 n=1 Tax=Ornithorhynchus anatinus RepID=UPI000155BB79 2.99878e-43
• FL-Next: sp=40S ribosomal protein S24; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S24 0.0
Complete
sp_v3.0_unigene53498 SustainPine v3.0 452
• AutoFact: 40S ribosomal protein S24 n=2 Tax=Micromonas RepID=C1EEJ3_MICSR 8.0e-38
• FL-Next: sp=40S ribosomal protein S24; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Predicted protein 0.0
N-terminus
sp_v3.0_unigene56288 SustainPine v3.0 431
• AutoFact: Probable 40S RIBOSOMAL PROTEIN S24 n=1 Tax=Sporisorium reilianum RepID=E7A074_9BASI 3.0e-36
• FL-Next: sp=40S ribosomal protein S24-1; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: 40S ribosomal protein S24 0.0
Complete
sp_v3.0_unigene81778 SustainPine v3.0 217
• AutoFact: 40S ribosomal protein S24 n=1 Tax=Postia placenta Mad-698-R RepID=B8PHQ4_POSPM 2.0e-13
• FL-Next: sp=40S ribosomal protein S24; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S24 1.204e-07
Putative N-terminus
sp_v3.0_unigene157053 SustainPine v3.0 405
• AutoFact: 40S ribosomal protein S24 n=5 Tax=Physcomitrella patens subsp. patens RepID=A9U2W2_PHYPA 1.0e-37
• FL-Next: sp=40S ribosomal protein S24; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S24 0.0
Putative Complete
sp_v3.0_unigene157731 SustainPine v3.0 392
• AutoFact: 40S ribosomal protein S24 n=2 Tax=Picea sitchensis RepID=A9NKN3_PICSI 8.0e-27
• FL-Next: sp=40S ribosomal protein S24; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S24 0.0
C-terminus
sp_v3.0_unigene159733 SustainPine v3.0 394
• AutoFact: 40S ribosomal protein S24 n=5 Tax=Physcomitrella patens subsp. patens RepID=A9U2W2_PHYPA 1.0e-37
• FL-Next: sp=40S ribosomal protein S24; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S24 0.0
Putative Complete
sp_v3.0_unigene165813 SustainPine v3.0 449
• AutoFact: 40S ribosomal protein S24 n=1 Tax=Tuber melanosporum Mel28 RepID=D5GL13_TUBMM 2.0e-26
• FL-Next: sp=40S ribosomal protein S24; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S24 0.0
C-terminus
sp_v3.0_unigene166277 SustainPine v3.0 283
• AutoFact: [J] COG2004 Ribosomal protein S24E 3.0e-24
• FL-Next: sp=40S ribosomal protein S24; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S24 0.0
N-terminus
sp_v3.0_unigene185549 SustainPine v3.0 677
• AutoFact: 40S ribosomal protein S24 n=4 Tax=Pleosporineae RepID=E5A1B1_LEPMC 0.0
• FL-Next: sp=40S ribosomal protein S24; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S24 0.0
Complete
sp_v3.0_unigene186592 SustainPine v3.0 600
• AutoFact: 40S ribosomal protein S24 n=5 Tax=Physcomitrella patens subsp. patens RepID=A9U2W2_PHYPA 1.4013e-45
• FL-Next: sp=40S ribosomal protein S24; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S24 0.0
Complete

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain