Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: mRNA splicing factor SYF2

Term: IPR013260  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene6339 SustainPine v3.0 1751
AutoFact: pre-mRNA-splicing factor SYF2 [Arabidopsis thaliana] gb|AAC64217.2| Expressed protein [Arabidopsis thaliana] gb|AAM15083.1| Expressed protein [Arabidopsis thaliana] gb|AAM20452.1| unknown protein [Arabidopsis thaliana] gb|AAM91242.1| unknown protein [Arab 0.0
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Putative Complete
sp_v3.0_unigene30787 SustainPine v3.0 618
AutoFact: Peptidyl-prolyl cis-trans isomerase n=1 Tax=Monosiga brevicollis RepID=A9UYA2_MONBE 0.0
FL-Next: sp=Peptidyl-prolyl cis-trans isomerase; Pinus halepensis (Aleppo pine). 0.0
Sma3: Peptidyl-prolyl cis-trans isomerase 0.0
Complete
sp_v3.0_unigene31886 SustainPine v3.0 379
AutoFact: Cyclophilin A protein-like protein (Fragment) n=1 Tax=Artemia franciscana RepID=C7DZD0_ARTSF 8.0e-25
FL-Next: sp=Peptidyl-prolyl cis-trans isomerase; Pinus taeda (Loblolly pine). 0.0
Sma3: Peptidyl-prolyl cis-trans isomerase 0.0
C-terminus
sp_v3.0_unigene58928 SustainPine v3.0 180
AutoFact: Peptidyl-prolyl cis-trans isomerase n=4 Tax=Pinaceae RepID=C9EGT5_9CONI 1.0e-18
FL-Next: sp=Peptidyl-prolyl cis-trans isomerase; Pinus halepensis (Aleppo pine). 0.0
Sma3: Peptidyl-prolyl cis-trans isomerase 0.0
Putative C-terminus
sp_v3.0_unigene65588 SustainPine v3.0 221
AutoFact: Peptidyl-prolyl cis-trans isomerase n=4 Tax=Pinaceae RepID=C9EGT5_9CONI 2.0e-22
FL-Next: sp=Peptidyl-prolyl cis-trans isomerase; Pinus halepensis (Aleppo pine). 0.0
Sma3: Peptidyl-prolyl cis-trans isomerase 0.0
Putative C-terminus
sp_v3.0_unigene65795 SustainPine v3.0 170
AutoFact: Peptidyl-prolyl cis-trans isomerase n=4 Tax=Pinaceae RepID=C9EGT5_9CONI 4.0e-16
FL-Next: sp=Peptidyl-prolyl cis-trans isomerase; Pinus halepensis (Aleppo pine). 0.0
Sma3: Peptidyl-prolyl cis-trans isomerase 0.0
Putative C-terminus
sp_v3.0_unigene72516 SustainPine v3.0 133
AutoFact: Pre-mRNA-splicing factor syf2, putative n=1 Tax=Ricinus communis RepID=B9S5M2_RICCO 2.0e-10
FL-Next: tr=Pre-mRNA-splicing factor syf2, putative; Ricinus communis (Castor bean). 0.0
Sma3: Putative uncharacterized protein At2g16860 7.797e-06
N-terminus
sp_v3.0_unigene81807 SustainPine v3.0 221
AutoFact: Pre-mRNA-splicing factor syf2 (Fragment) n=1 Tax=Camellia sinensis RepID=F4YFJ8_CAMSI 1.0e-13
FL-Next: tr=Putative uncharacterized protein; Medicago truncatula (Barrel medic) (Medicago tribuloides). 0.0
Putative N-terminus
sp_v3.0_unigene100325 SustainPine v3.0 424
AutoFact: Peptidyl-prolyl cis-trans isomerase (Fragment) n=1 Tax=Vitis vinifera RepID=D7U572_VITVI 0.0
FL-Next: sp=Peptidyl-prolyl cis-trans isomerase; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Peptidyl-prolyl cis-trans isomerase 0.0
Putative C-terminus
sp_v3.0_unigene129253 SustainPine v3.0 730
AutoFact: Pre-mRNA-splicing factor syf2 (Fragment) n=1 Tax=Camellia sinensis RepID=F4YFJ8_CAMSI 8.0e-35
FL-Next: tr=Putative uncharacterized protein; Glycine max (Soybean) (Glycine hispida). 0.0
C-terminus
sp_v3.0_unigene138322 SustainPine v3.0 327
AutoFact: pfam08231, SYF2, SYF2 splicing factor 3.0e-16
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Internal
sp_v3.0_unigene146030 SustainPine v3.0 590
AutoFact: Peptidyl-prolyl cis-trans isomerase n=1 Tax=Cryptomeria japonica RepID=Q1XG52_CRYJA 0.0
FL-Next: sp=Peptidyl-prolyl cis-trans isomerase; Cryptomeria japonica (Japanese cedar) (Cupressus japonica). 0.0
Sma3: Peptidyl-prolyl cis-trans isomerase 0.0
Complete
sp_v3.0_unigene146159 SustainPine v3.0 664
AutoFact: Peptidyl-prolyl cis-trans isomerase n=1 Tax=Gerbera hybrid cultivar RepID=A8CYN7_GERHY 2.0e-26
FL-Next: sp=Peptidyl-prolyl cis-trans isomerase; Pinus taeda (Loblolly pine). 0.0
Sma3: Peptidyl-prolyl cis-trans isomerase 0.0
Complete
sp_v3.0_unigene151123 SustainPine v3.0 438
AutoFact: Peptidyl-prolyl cis-trans isomerase n=1 Tax=Chlorella variabilis RepID=E1Z6E6_9CHLO 0.0
FL-Next: sp=Peptidyl-prolyl cis-trans isomerase; Cryptomeria japonica (Japanese cedar) (Cupressus japonica). 0.0
Sma3: Peptidyl-prolyl cis-trans isomerase 0.0
C-terminus
sp_v3.0_unigene151717 SustainPine v3.0 227
AutoFact: WD-repeat protein, putative n=1 Tax=Ricinus communis RepID=B9SSV2_RICCO 3.0e-28
FL-Next: sp=Peptidyl-prolyl cis-trans isomerase; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Peptidyl-prolyl cis-trans isomerase 0.0
Putative C-terminus
sp_v3.0_unigene151871 SustainPine v3.0 254
AutoFact: Cyclophilin B n=1 Tax=Dictyostelium fasciculatum RepID=F4Q2H7_9MYCE 5.0e-32
FL-Next: sp=Peptidyl-prolyl cis-trans isomerase; Pinus taeda (Loblolly pine). 0.0
Sma3: Peptidyl-prolyl cis-trans isomerase 0.0
Putative C-terminus
sp_v3.0_unigene152577 SustainPine v3.0 248
AutoFact: Peptidyl-prolyl cis-trans isomerase n=1 Tax=Selaginella moellendorffii RepID=D8RE87_SELML 2.0e-33
FL-Next: sp=Peptidyl-prolyl cis-trans isomerase; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Peptidyl-prolyl cis-trans isomerase 0.0
Putative C-terminus
sp_v3.0_unigene153296 SustainPine v3.0 287
AutoFact: Peptidyl-prolyl cis-trans isomerase n=1 Tax=Ziziphus jujuba RepID=B5LWR0_ZIZJJ 1.0e-30
FL-Next: sp=Peptidyl-prolyl cis-trans isomerase; Pinus halepensis (Aleppo pine). 0.0
Sma3: Peptidyl-prolyl cis-trans isomerase 0.0
C-terminus
sp_v3.0_unigene153408 SustainPine v3.0 352
AutoFact: pfam08231, SYF2, SYF2 splicing factor 1.0e-23
FL-Next: tr=Putative uncharacterized protein; (Phytophthora megasperma f. sp. glycines). 0.0
C-terminus
sp_v3.0_unigene153963 SustainPine v3.0 325
AutoFact: Peptidyl-prolyl cis-trans isomerase n=1 Tax=Chlamydomonas reinhardtii RepID=A8JGI0_CHLRE 4.0e-31
FL-Next: sp=Peptidyl-prolyl cis-trans isomerase; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Peptidyl-prolyl cis-trans isomerase 0.0
C-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain