Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: cytosolic small ribosomal subunit

Term: GO:0022627  Help

Source: GO from Sma3

Ontology: Cellular Component

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v3.0_unigene74177 SustainPine v3.0 464
• AutoFact: 40S ribosomal protein S10 n=2 Tax=Phytophthora infestans RepID=D0MQD2_PHYIT 2.0e-28
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S10 2.61e-11
Putative N-terminus
sp_v3.0_unigene74283 SustainPine v3.0 421
• AutoFact: 40S ribosomal protein S12 n=5 Tax=Agaricomycetes RepID=B8PIM8_POSPM 0.0
• FL-Next: sp=40S ribosomal protein S12; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S12 0.0
C-terminus
sp_v3.0_unigene74513 SustainPine v3.0 401
• AutoFact: 40S ribosomal protein S16-3 n=2 Tax=Arabidopsis thaliana RepID=A8MRX2_ARATH 5.60519e-45
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S16 1.467e-36
N-terminus
sp_v3.0_unigene74656 SustainPine v3.0 240
• AutoFact: RecName: Full=40S ribosomal protein S5 emb|CAA06491.1| 40S ribosomal protein S5 [Cicer arietinum] 2.0e-21
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S5 3.497e-21
Internal
sp_v3.0_unigene74736 SustainPine v3.0 239
• AutoFact: RecName: Full=40S ribosomal protein S5 emb|CAA06491.1| 40S ribosomal protein S5 [Cicer arietinum] 2.0e-21
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S5 3.497e-21
Internal
sp_v3.0_unigene74857 SustainPine v3.0 219
• AutoFact: S15 ribosomal protein n=1 Tax=Dunaliella tertiolecta RepID=Q8L4R2_DUNTE 2.0e-13
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S15 3.725e-20
N-terminus
sp_v3.0_unigene74929 SustainPine v3.0 360
• AutoFact: Ribosomal protein S9, component of cytosolic 80S ribosome and 40S small subunit n=3 Tax=Chlamydomonadales RepID=A8JGF8_CHLRE 7.0e-29
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S9 9.80909e-45
C-terminus
sp_v3.0_unigene74937 SustainPine v3.0 321
• AutoFact: 40S ribosomal protein S2 n=1 Tax=Picea abies RepID=Q9AVU0_PICAB 0.0
• FL-Next: tr=40S ribosomal protein S2; Picea abies (Norway spruce) (Picea excelsa). 0.0
• Sma3: 40S ribosomal protein S2 2.544e-19
Internal
sp_v3.0_unigene75080 SustainPine v3.0 130
• AutoFact: Putative ribosomal protein S3 n=1 Tax=Mayetiola destructor RepID=D1MLN7_MAYDE 9.0e-16
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S3, putative 1.882e-08
Putative N-terminus
sp_v3.0_unigene75562 SustainPine v3.0 272
• AutoFact: 40S ribosomal protein S5, putative (Fragment) n=1 Tax=Perkinsus marinus ATCC 50983 RepID=C5LFJ0_9ALVE 3.0e-28
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S5 6.618e-22
C-terminus
sp_v3.0_unigene75573 SustainPine v3.0 261
• AutoFact: putative 40S ribosomal protein S7 [Populus x canadensis] 6.0e-10
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S7 1.075e-26
Misassembled
sp_v3.0_unigene75762 SustainPine v3.0 164
• AutoFact: 40S ribosomal protein S17 n=1 Tax=Acromyrmex echinatior RepID=F4WRX8_9HYME 5.0e-18
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S17-4 3.433e-12
Putative N-terminus
sp_v3.0_unigene76046 SustainPine v3.0 398
• AutoFact: RecName: Full=40S ribosomal protein S17 gb|AAD50774.1|AF161704_1 40S ribosomal protein S17 [Solanum lycopersicum] 3.0e-37
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S17-4 4.166e-12
N-terminus
sp_v3.0_unigene76118 SustainPine v3.0 358
• AutoFact: 40S ribosomal protein S5 n=1 Tax=Chlamydomonas sp. ICE-L RepID=Q2UVI0_9CHLO 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S5 1.535e-21
Internal
sp_v3.0_unigene76281 SustainPine v3.0 330
• AutoFact: Ribosomal protein S7 n=1 Tax=Elaeis guineensis RepID=B3TLX3_ELAGV 7.0e-28
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S7 7.776e-26
Misassembled
sp_v3.0_unigene76513 SustainPine v3.0 279
• AutoFact: Singapore isolate B (sub-type 7) whole genome shotgun sequence assembly, scaffold_15 n=1 Tax=Blastocystis hominis RepID=D8M187_BLAHO 4.0e-28
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S4 2.131e-20
Putative C-terminus
sp_v3.0_unigene76543 SustainPine v3.0 301
• AutoFact: Ribosomal family S4e containing protein n=1 Tax=Tetrahymena thermophila RepID=UPI00006CBCC9 4.0e-31
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S4 2.819e-14
Internal
sp_v3.0_unigene76669 SustainPine v3.0 193
• AutoFact: PREDICTED: similar to ribosomal protein S18e [Tribolium castaneum] gb|EFA04159.1| hypothetical protein TcasGA2_TC014405 [Tribolium castaneum] 1.0e-11
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S18 1.95e-12
N-terminus
sp_v3.0_unigene77003 SustainPine v3.0 93
• AutoFact: Probable 40S ribosomal protein S5 n=1 Tax=Sporisorium reilianum RepID=E6ZL00_9BASI 1.0e-08
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S5 1.959e-14
Putative C-terminus
sp_v3.0_unigene77282 SustainPine v3.0 256
• AutoFact: ribosomal protein S4 [Panax ginseng] 2.0e-11
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S4 2.834e-17
C-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain