Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: nuclear body

Term: GO:0016604  Help

Source: GO from Sma3

Ontology: Cellular Component


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene138297 SustainPine v3.0 510
AutoFact: DNA binding protein, putative n=1 Tax=Ricinus communis RepID=B9RG14_RICCO 5.0e-22
FL-Next: tr=Ethylene-responsive element binding factor-like protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: AP2/ERF domain-containing transcription factor 1.4013e-45
Putative C-terminus
sp_v3.0_unigene139964 SustainPine v3.0 394
AutoFact: Frizzy panicle n=11 Tax=Oryza RepID=Q8H3Q1_ORYSJ 3.0e-25
FL-Next: tr=Ethylene-responsive element binding factor-like protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: AP2/ERF domain-containing transcription factor 0.0
N-terminus
sp_v3.0_unigene142567 SustainPine v3.0 362
AutoFact: Ethylene-responsive transcription factor 4 n=4 Tax=Nicotiana RepID=ERF4_NICSY 2.0e-13
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: AP2/ERF domain-containing transcription factor 2.285e-28
Putative N-terminus
sp_v3.0_unigene156967 SustainPine v3.0 339
AutoFact: Polyadenylate-binding protein, putative n=1 Tax=Ricinus communis RepID=B9RIF4_RICCO 4.0e-25
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: RNA-binding protein 8A 1.186e-07
Internal
sp_v3.0_unigene159298 SustainPine v3.0 426
AutoFact: Cell division control protein 2-like protein (Fragment) n=1 Tax=Thalassiosira pseudonana RepID=B8CAP3_THAPS 5.0e-30
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Mitogen-activated protein kinase 1.012e-11
Internal
sp_v3.0_unigene160805 SustainPine v3.0 537
AutoFact: Ribosomal protein L13 containing protein n=2 Tax=Tetrahymena thermophila RepID=Q23YQ6_TETTH 0.0
FL-Next: tr=Cdc2Pa protein; Picea abies (Norway spruce) (Picea excelsa). 0.0
Sma3: CDKC 1.188e-15
Internal
sp_v3.0_unigene160859 SustainPine v3.0 458
AutoFact: [R] COG0724 RNA-binding proteins (RRM domain) 4.0e-20
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene165766 SustainPine v3.0 437
AutoFact: Small nuclear ribonucleoprotein Sm D3 n=4 Tax=leotiomyceta RepID=B2W6T3_PYRTR 2.0e-28
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Small nuclear ribonucleoprotein, putative 5.671e-13
Putative Complete
sp_v3.0_unigene186617 SustainPine v3.0 413
AutoFact: RNA-binding protein 8A [Danio rerio] sp|Q5D018.1|RBM8A_DANRE RecName: Full=RNA-binding protein 8A; AltName: Full=RNA-binding motif protein 8A; AltName: Full=Ribonucleoprotein RBM8A gb|AAH90261.1| Zgc:110525 [Danio rerio] 5.0e-30
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: RNA-binding protein 8A 1.207e-07
C-terminus
sp_v3.0_unigene200893 SustainPine v3.0 457
AutoFact: AP2 domain transcription factor RAP2 n=1 Tax=Cucumis melo subsp. melo RepID=E5GB56_CUCME 8.0e-22
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: AP2/ERF domain-containing transcription factor 6.005e-38
Internal
sp_v3.0_unigene205762 SustainPine v3.0 708
AutoFact: Ethylene-responsive element binding factor-like protein (Fragment) n=3 Tax=Picea sitchensis RepID=E0ZDA4_PICSI 3.0e-27
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: AP2/ERF domain-containing transcription factor 4.378e-28
Putative Complete
sp_v3.0_unigene208570 SustainPine v3.0 913
AutoFact: putative CRK1 protein(cdc2-related kinase 1) [Oryza sativa Japonica Group] dbj|BAD30726.1| putative CRK1 protein(cdc2-related kinase 1) [Oryza sativa Japonica Group] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Cell division protein kinase, putative 2.929e-15
N-terminus
sp_v3.0_unigene209302 SustainPine v3.0 670
AutoFact: Ethylene-responsive element binding factor-like protein n=5 Tax=Picea sitchensis RepID=E0ZGY9_PICSI 3.0e-28
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: AP2/ERF domain-containing transcription factor 2.114e-34
N-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain