Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: chloroplast organization

Term: GO:0009658  Help

Source: GO from Sma3

Ontology: Biological Process


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene131168 SustainPine v3.0 381
AutoFact: [D] COG0037 Predicted ATPase of the PP-loop superfamily implicated in cell cycle control 7.0e-14
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene131169 SustainPine v3.0 304
AutoFact: ATP-dependent Clp protease ATP-binding subunit clpA homolog CD4A, chloroplastic n=1 Tax=Solanum lycopersicum RepID=CLPAA_SOLLC 1.0e-08
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
C-terminus
sp_v3.0_unigene131471 SustainPine v3.0 390
AutoFact: Ribonuclease II/R family protein [Arabidopsis thaliana] gb|AAQ62877.1| At5g02250 [Arabidopsis thaliana] dbj|BAD44146.1| ribonuclease II-like protein [Arabidopsis thaliana] gb|AED90450.1| Ribonuclease II/R family protein [Arabidopsis thaliana] 1.0e-36
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Sma3: Ribonuclease II-like protein 1.475e-09
Internal
sp_v3.0_unigene137427 SustainPine v3.0 311
AutoFact: ClpC protease [Spinacia oleracea] 1.0e-32
FL-Next: sp=Chaperone protein ClpC1, chloroplastic; Oryza sativa subsp. japonica (Rice). 0.0
Sma3: ATP-dependent Clp protease ATP-binding subunit clpA homolog 1.505e-13
Internal
sp_v3.0_unigene137705 SustainPine v3.0 193
AutoFact: ATP-dependent Clp protease proteolytic subunit n=1 Tax=Picea sitchensis RepID=A9NTR6_PICSI 2.0e-20
FL-Next: sp=ATP-dependent Clp protease proteolytic subunit; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: ATP-dependent Clp protease proteolytic subunit 4.861e-20
Internal
sp_v3.0_unigene151885 SustainPine v3.0 351
AutoFact: ATP-dependent chaperone ClpB n=1 Tax=Rubrivivax benzoatilyticus JA2 RepID=F3LW36_9BURK 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Heat shock protein 101 4.114e-16
N-terminus
sp_v3.0_unigene153301 SustainPine v3.0 422
AutoFact: Heat shock protein 101 n=2 Tax=Arabidopsis RepID=HS101_ARATH 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Heat shock protein 101 6.752e-16
Internal
sp_v3.0_unigene153793 SustainPine v3.0 333
AutoFact: ATPase AAA-2 domain protein n=2 Tax=Flavobacterium RepID=A5FED1_FLAJ1 3.0e-37
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Chaperone, Hsp100 family, clpb-type 2.409e-08
Putative C-terminus
sp_v3.0_unigene163980 SustainPine v3.0 266
AutoFact: ClpB [Phaseolus lunatus] 4.0e-27
FL-Next: sp=Chaperone protein ClpB3, mitochondrial; Oryza sativa subsp. japonica (Rice). 0.0
Sma3: Chaperone clpb, putative 7.374e-08
Internal
sp_v3.0_unigene184906 SustainPine v3.0 442
AutoFact: Chloroplast inner envelope protein, 110 kD (IEP110) n=2 Tax=Pisum sativum RepID=O24293_PEA 4.0e-35
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Putative chloroplast inner envelope protein 2.354e-08
Internal
sp_v3.0_unigene185950 SustainPine v3.0 541
AutoFact: RNA binding protein [Arabidopsis thaliana] gb|AAF21211.1|AC013483_35 unknown protein [Arabidopsis thaliana] gb|AAL61923.1| unknown protein [Arabidopsis thaliana] gb|AAN65055.1| unknown protein [Arabidopsis thaliana] gb|AEE74630.1| RNA binding protein [Ara 1.0e-25
FL-Next: tr=Predicted protein; Physcomitrella patens subsp. patens (Moss). 0.0
Sma3: Tab2 protein 5.819e-10
C-terminus
sp_v3.0_unigene186860 SustainPine v3.0 659
AutoFact: Casein lytic proteinase B3 n=3 Tax=Arabidopsis RepID=Q9LF37_ARATH 5.0e-32
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
C-terminus
sp_v3.0_unigene202126 SustainPine v3.0 826
AutoFact: pfam01106, NifU, NifU-like domain 3.0e-07
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Nitrogen fixation protein nifU, putative 2.452e-08
Putative Complete

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain