Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: regulation of seed germination

Term: GO:0010029  Help

Source: GO from Sma3

Ontology: Biological Process


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene1701 SustainPine v3.0 1417
AutoFact: protein kinase-like protein [Arabidopsis thaliana] emb|CAB80112.1| protein kinase-like protein [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Serine/threonine protein kinase 6.105e-08
Complete
sp_v3.0_unigene1913 SustainPine v3.0 2472
AutoFact: Phytochrome n=12 Tax=Pinaceae RepID=PHY_PICAB 0.0
FL-Next: sp=Phytochrome; Picea abies (Norway spruce) (Picea excelsa). 0.0
Sma3: Phytochrome A 6.172e-19
C-terminus
sp_v3.0_unigene3713 SustainPine v3.0 3726
AutoFact: PREDICTED: similar to cytokinin receptor 1 n=1 Tax=Vitis vinifera RepID=UPI00019828F5 0.0
FL-Next: sp=Phytochrome; Picea abies (Norway spruce) (Picea excelsa). 0.0
Sma3: Histidine kinase 2.911e-31
C-terminus
sp_v3.0_unigene4145 SustainPine v3.0 1877
AutoFact: Serine/threonine-protein kinase SRK2E n=6 Tax=rosids RepID=SRK2E_ARATH 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Serine/threonine protein kinase 4.861e-08
Complete
sp_v3.0_unigene4528 SustainPine v3.0 423
AutoFact: Serine/threonine-protein kinase SAPK10, putative n=1 Tax=Ricinus communis RepID=B9S8L1_RICCO 1.0e-31
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Protein kinase 2.27e-07
Internal
sp_v3.0_unigene4937 SustainPine v3.0 564
AutoFact: Histidine kinase 2 (Fragment) n=1 Tax=Betula pendula RepID=B8QJH1_BETPN 1.0e-36
FL-Next: sp=Histidine kinase 2; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Histidine kinase 6.446e-32
Internal
sp_v3.0_unigene6004 SustainPine v3.0 1201
AutoFact: Cytokinin receptor 1 (Fragment) n=1 Tax=Betula pendula RepID=B8QJH0_BETPN 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Histidine kinase 1.525e-31
C-terminus
sp_v3.0_unigene6808 SustainPine v3.0 2395
AutoFact: PREDICTED: similar to cytokinin receptor 1 n=1 Tax=Vitis vinifera RepID=UPI00019828F5 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Histidine kinase 2.131e-31
Complete
sp_v3.0_unigene7440 SustainPine v3.0 1921
AutoFact: Histidine kinase 1, 2, 3 plant, putative n=1 Tax=Ricinus communis RepID=B9T0D3_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Histidine kinase 1.525e-31
C-terminus
sp_v3.0_unigene8816 SustainPine v3.0 2320
AutoFact: protein kinase-like protein [Arabidopsis thaliana] emb|CAB80112.1| protein kinase-like protein [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: CBL-interacting protein kinase 3 1.708e-09
Complete
sp_v3.0_unigene10143 SustainPine v3.0 1922
AutoFact: transcription factor TCP9 [Arabidopsis thaliana] sp|O64647.1|TCP9_ARATH RecName: Full=Transcription factor TCP9 gb|AAK43925.1|AF370606_1 putative PCF2-like DNA binding protein [Arabidopsis thaliana] gb|AAC06168.1| putative PCF2-like DNA binding protein [A 1.0e-27
FL-Next: tr=Transcription factor TCP15; Medicago truncatula (Barrel medic) (Medicago tribuloides). 0.0
Sma3: Transcription factor, putative 3.041e-15
Complete
sp_v3.0_unigene14388 SustainPine v3.0 1313
AutoFact: TPA: histidine kinase [Oryza sativa Japonica Group] gb|EEE59816.1| hypothetical protein OsJ_12359 [Oryza sativa Japonica Group] 0.0
FL-Next: Isoform 2 of Histidine kinase 4 OS=Arabidopsis thaliana GN=AHK4 0.0
Sma3: Histidine kinase 1.671e-31
Internal
sp_v3.0_unigene14463 SustainPine v3.0 620
AutoFact: putative histidine kinase 1 [Oryza sativa Japonica Group] 0.0
FL-Next: sp=Histidine kinase 2; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Histidine kinase 9.67e-32
Internal
sp_v3.0_unigene15303 SustainPine v3.0 371
AutoFact: TPA: histidine kinase [Oryza sativa Japonica Group] 4.0e-22
FL-Next: sp=Histidine kinase 3; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Histidine kinase cytokinin receptor 4.129e-17
Internal
sp_v3.0_unigene17851 SustainPine v3.0 620
AutoFact: 26S proteasome non-atpase regulatory subunit, putative n=1 Tax=Ricinus communis RepID=B9T6I9_RICCO 6.0e-15
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: 26S proteasome regulatory subunit S5A 2.304e-09
C-terminus
sp_v3.0_unigene20217 SustainPine v3.0 496
AutoFact: Serine/threonine-protein kinase SAPK1, putative n=1 Tax=Ricinus communis RepID=B9T099_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Protein kinase 3.861e-07
N-terminus
sp_v3.0_unigene25359 SustainPine v3.0 2125
AutoFact: Outward-rectifying potassium channel KCO1 n=1 Tax=Eucalyptus camaldulensis RepID=Q9LLM5_EUCCA 0.0
FL-Next: sp=Two-pore potassium channel 1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Outward rectifying potassium channel 2.45e-16
Complete
sp_v3.0_unigene39467 SustainPine v3.0 337
AutoFact: PREDICTED: similar to cytokinin receptor 1 n=1 Tax=Vitis vinifera RepID=UPI00019828F5 8.40779e-45
FL-Next: Isoform 2 of Histidine kinase 4 OS=Arabidopsis thaliana GN=AHK4 0.0
Sma3: Histidine kinase 1.108e-31
Internal
sp_v3.0_unigene40753 SustainPine v3.0 628
AutoFact: transcription factor TCP15 [Arabidopsis thaliana] sp|Q9C9L2.1|TCP15_ARATH RecName: Full=Transcription factor TCP15 gb|AAG52540.1|AC013289_7 unknown protein; 54453-53476 [Arabidopsis thaliana] gb|AAL08240.1| At1g69690/T6C23_11 [Arabidopsis thaliana] gb|AAL 2.0e-32
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Transcription factor, putative 2.542e-15
Putative N-terminus
sp_v3.0_unigene51453 SustainPine v3.0 423
AutoFact: putative TCP transcription factor [Solanum tuberosum] 6.0e-22
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: TCP-domain protein 9.085e-14
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain