Sustainpine_db
HomeAssembliesBLASTSearchInstitutions

Assembly Name: SustainPine v3.0

Name: regulation of seed germination

Term: GO:0010029  Help

Source: GO from Sma3

Ontology: Biological Process


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene149228 SustainPine v3.0 291
AutoFact: PREDICTED: similar to TCP family transcription factor, putative n=1 Tax=Vitis vinifera RepID=UPI000198569D 1.0e-07
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: TCP-domain protein-like, putative 8.71e-09
Internal
sp_v3.0_unigene157941 SustainPine v3.0 408
AutoFact: [O] COG5148 26S proteasome regulatory complex, subunit RPN10/PSMD4 4.0e-23
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: 26S proteasome regulatory subunit S5A 3.801e-09
N-terminus
sp_v3.0_unigene163248 SustainPine v3.0 472
AutoFact: transcription factor TCP9 [Arabidopsis thaliana] sp|O64647.1|TCP9_ARATH RecName: Full=Transcription factor TCP9 gb|AAK43925.1|AF370606_1 putative PCF2-like DNA binding protein [Arabidopsis thaliana] gb|AAC06168.1| putative PCF2-like DNA binding protein [A 7.0e-27
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: TCP-domain protein 6.598e-14
Putative N-terminus
sp_v3.0_unigene163563 SustainPine v3.0 347
AutoFact: Serine/threonine-protein kinase SAPK5 n=4 Tax=Oryza sativa RepID=SAPK5_ORYSJ 1.0e-26
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Serine/threonine-protein kinase SAPK7 2.325e-07
N-terminus
sp_v3.0_unigene165050 SustainPine v3.0 214
AutoFact: Phytochrome N (Fragment) n=12 Tax=Pinaceae RepID=Q9FSD5_PINSY 1.0e-21
FL-Next: sp=Phytochrome; Pinus sylvestris (Scots pine). 0.0
Sma3: Phytochrome A 0.0
Internal
sp_v3.0_unigene165115 SustainPine v3.0 325
AutoFact: Cytokinin receptor AtAHK4-like protein n=1 Tax=Physcomitrella patens subsp. patens RepID=A9TKN3_PHYPA 2.0e-34
FL-Next: sp=Histidine kinase 2; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Histidine kinase 1.021e-31
Internal
sp_v3.0_unigene166863 SustainPine v3.0 448
AutoFact: Cytokinin receptor 1 (Fragment) n=1 Tax=Betula pendula RepID=B8QJH0_BETPN 2.0e-40
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Histidine kinase 1.234e-31
C-terminus
sp_v3.0_unigene185362 SustainPine v3.0 596
AutoFact: Phytochrome n=12 Tax=Pinaceae RepID=PHY_PICAB 0.0
FL-Next: sp=Phytochrome; Picea abies (Norway spruce) (Picea excelsa). 0.0
Sma3: Phytochrome 1.28e-15
Internal
sp_v3.0_unigene203702 SustainPine v3.0 439
AutoFact: serine/threonine-protein kinase [Fagus sylvatica] 7.0e-27
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Serine/threonine-protein kinase SAPK7 3.81e-07
Internal

Go to Annotations List

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain