Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: RNA-binding, CRM domain

Term: IPR001890  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene1503 SustainPine v3.0 1488
AutoFact: CRM family member 3 [Zea mays] gb|ABU96081.1| CRM family member 3 [Zea mays] 0.0
FL-Next: sp=Chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic; Zea mays (Maize). 0.0
C-terminus
sp_v3.0_unigene3750 SustainPine v3.0 1689
AutoFact: CRS2-associated factor 2, chloroplastic precursor [Zea mays] sp|Q84N48.1|CAF2P_MAIZE RecName: Full=CRS2-associated factor 2, chloroplastic; AltName: Full=Chloroplastic group IIA intron splicing facilitator CRS2-associated factor 2; Flags: Precursor gb|AAP 3.0e-38
FL-Next: sp=CRS2-associated factor 2, chloroplastic; Oryza sativa subsp. japonica (Rice). 0.0
Sma3: Chloroplastic group IIA intron splicing facilitator CRS2-associated factor 2 2.0e-13
C-terminus
sp_v3.0_unigene6420 SustainPine v3.0 1141
AutoFact: CRS1_YhbY domain containing protein 1.0e-18
FL-Next: sp=CRS2-associated factor 2, mitochondrial; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Chloroplastic group IIA intron splicing facilitator CRS2-associated factor 2 1.988e-12
C-terminus
sp_v3.0_unigene7081 SustainPine v3.0 1062
AutoFact: putative RNA-binding protein containing KH domain protein [Arabidopsis thaliana] gb|AEE87011.1| putative RNA-binding protein containing KH domain protein [Arabidopsis thaliana] 1.0e-20
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
C-terminus
sp_v3.0_unigene12340 SustainPine v3.0 1138
AutoFact: RNA-binding CRS1 / YhbY (CRM) domain protein [Arabidopsis thaliana] dbj|BAB01285.1| unnamed protein product [Arabidopsis thaliana] gb|AEE77336.1| RNA-binding CRS1 / YhbY (CRM) domain protein [Arabidopsis thaliana] 0.0
FL-Next: sp=Uncharacterized CRM domain-containing protein At3g25440, chloroplastic; Arabidopsis thaliana (Mouse-ear cress). 0.0
Putative C-terminus
sp_v3.0_unigene14354 SustainPine v3.0 1182
AutoFact: group II intron splicing factor CRS1-like [Oryza sativa Japonica Group] dbj|BAD87111.1| group II intron splicing factor CRS1-like [Oryza sativa Japonica Group] 1.4013e-45
FL-Next: sp=Uncharacterized CRM domain-containing protein At3g25440, chloroplastic; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: CFM6 1.577e-09
Putative C-terminus
sp_v3.0_unigene17797 SustainPine v3.0 1938
AutoFact: CRS2-associated factor 1, chloroplastic precursor [Zea mays] sp|Q84N49.1|CAF1P_MAIZE RecName: Full=CRS2-associated factor 1, chloroplastic; AltName: Full=Chloroplastic group IIA intron splicing facilitator CRS2-associated factor 1; Flags: Precursor gb|AAP 4.0e-07
FL-Next: sp=CRS2-associated factor 1, chloroplastic; Oryza sativa subsp. japonica (Rice). 0.0
C-terminus
sp_v3.0_unigene21979 SustainPine v3.0 188
AutoFact: CRS2-associated factor 1, chloroplastic precursor [Zea mays] sp|Q84N49.1|CAF1P_MAIZE RecName: Full=CRS2-associated factor 1, chloroplastic; AltName: Full=Chloroplastic group IIA intron splicing facilitator CRS2-associated factor 1; Flags: Precursor gb|AAP 9.0e-19
FL-Next: sp=CRS2-associated factor 1, chloroplastic; Oryza sativa subsp. japonica (Rice). 0.0
Sma3: Chloroplastic group IIA intron splicing facilitator CRS2-associated factor 1 1.67e-13
Internal
sp_v3.0_unigene22089 SustainPine v3.0 426
AutoFact: CRS1_YhbY domain containing protein 1.0e-06
FL-Next: sp=CRS2-associated factor 1, mitochondrial; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Chloroplastic group IIA intron splicing facilitator CRS2-associated factor 1 1.183e-12
Internal
sp_v3.0_unigene28747 SustainPine v3.0 863
AutoFact: CRM family member 2 [Arabidopsis thaliana] gb|AAM97013.1| unknown protein [Arabidopsis thaliana] gb|AAQ89616.1| At3g01370 [Arabidopsis thaliana] gb|AEE73657.1| CRM family member 2 [Arabidopsis thaliana] 1.00053e-42
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
N-terminus
sp_v3.0_unigene29152 SustainPine v3.0 980
AutoFact: CRS2-associated factor 2 [Arabidopsis thaliana] sp|Q9LDA9.1|CAF2P_ARATH RecName: Full=CRS2-associated factor 2, chloroplastic; AltName: Full=Chloroplastic group IIA intron splicing facilitator CRS2-associated factor 2; Flags: Precursor gb|AAF79596.1|AC007 0.0
FL-Next: sp=CRS2-associated factor 2, chloroplastic; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Chloroplastic group IIA intron splicing facilitator CRS2-associated factor 2 8.321e-13
N-terminus
sp_v3.0_unigene36498 SustainPine v3.0 1054
AutoFact: Protein CREG1, putative n=1 Tax=Ricinus communis RepID=B9RUG5_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Complete
sp_v3.0_unigene41462 SustainPine v3.0 138
AutoFact: RNA-binding CRS1 / YhbY (CRM) domain protein [Arabidopsis thaliana] dbj|BAD43014.1| putative protein [Arabidopsis thaliana] dbj|BAD44234.1| putative protein [Arabidopsis thaliana] dbj|BAD44611.1| putative protein [Arabidopsis thaliana] gb|AAY25455.1| At4g 1.0e-11
FL-Next: sp=Uncharacterized CRM domain-containing protein At3g25440, chloroplastic; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene42555 SustainPine v3.0 808
AutoFact: CRS1_YhbY domain containing protein 3.0e-15
FL-Next: sp=CRS2-associated factor 1, mitochondrial; Oryza sativa subsp. japonica (Rice). 0.0
Sma3: Chloroplastic group IIA intron splicing facilitator CRS2-associated factor 2 2.278e-12
Internal
sp_v3.0_unigene44343 SustainPine v3.0 357
AutoFact: RNA-binding CRS1 / YhbY (CRM) domain protein [Arabidopsis thaliana] dbj|BAB01285.1| unnamed protein product [Arabidopsis thaliana] gb|AEE77336.1| RNA-binding CRS1 / YhbY (CRM) domain protein [Arabidopsis thaliana] 1.0e-10
FL-Next: tr=Putative uncharacterized protein; Ricinus communis (Castor bean). 0.0
Internal
sp_v3.0_unigene44626 SustainPine v3.0 294
AutoFact: CRM family member 3 [Zea mays] gb|ABU96081.1| CRM family member 3 [Zea mays] 1.0e-34
FL-Next: sp=Chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic; Zea mays (Maize). 0.0
Sma3: Protein CHLOROPLAST RNA SPLICING 1 1.483e-12
Internal
sp_v3.0_unigene46586 SustainPine v3.0 270
AutoFact: unknow protein [Oryza sativa Japonica Group] gb|EEE62307.1| hypothetical protein OsJ_17096 [Oryza sativa Japonica Group] 3.0e-12
FL-Next: tr=Predicted protein; subsp. trichocarpa). 0.0
Internal
sp_v3.0_unigene47118 SustainPine v3.0 314
AutoFact: CRM family member 3A [Arabidopsis thaliana] gb|AEE76712.1| CRM family member 3A [Arabidopsis thaliana] 8.0e-25
FL-Next: sp=Chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic; Zea mays (Maize). 0.0
Internal
sp_v3.0_unigene48227 SustainPine v3.0 225
AutoFact: CRS1 / YhbY (CRM) domain-containing protein [Arabidopsis thaliana] dbj|BAB01105.1| unnamed protein product [Arabidopsis thaliana] gb|AAL36264.1| unknown protein [Arabidopsis thaliana] gb|AEE76091.1| CRS1 / YhbY (CRM) domain-containing protein [Arabidopsis 1.0e-21
FL-Next: sp=Chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic; Zea mays (Maize). 0.0
Sma3: Protein CHLOROPLAST RNA SPLICING 1 7.691e-13
Internal
sp_v3.0_unigene49792 SustainPine v3.0 652
AutoFact: CRM family member 3 [Zea mays] gb|ABU96081.1| CRM family member 3 [Zea mays] 0.0
FL-Next: sp=Chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic; Oryza sativa subsp. japonica (Rice). 0.0
Sma3: Protein CHLOROPLAST RNA SPLICING 1 1.681e-12
Putative C-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain