Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: thylakoid lumen

Term: GO:0031977  Help

Source: GO from Sma3

Ontology: Cellular Component

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v3.0_unigene140798 SustainPine v3.0 713
• AutoFact: Fructose-bisphosphate aldolase n=1 Tax=Picea sitchensis RepID=A9NMQ0_PICSI 0.0
• FL-Next: sp=Fructose-bisphosphate aldolase; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Fructose-bisphosphate aldolase 0.0
C-terminus
sp_v3.0_unigene140827 SustainPine v3.0 635
• AutoFact: RecName: Full=Ferredoxin--NADP reductase, chloroplastic; Short=FNR; Flags: Precursor gb|AAA33029.1| ferredoxin-NADP+ reductase precursor [Mesembryanthemum crystallinum] prf||1604475A ferredoxin NADP reductase 2.0e-29
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Ferredoxin--NADP reductase 2.331e-27
C-terminus
sp_v3.0_unigene140877 SustainPine v3.0 554
• AutoFact: Peptidyl-prolyl cis-trans isomerase n=1 Tax=Picea sitchensis RepID=A9NK21_PICSI 0.0
• FL-Next: sp=Peptidyl-prolyl cis-trans isomerase; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Peptidyl-prolyl cis-trans isomerase 0.0
Misassembled
sp_v3.0_unigene141393 SustainPine v3.0 287
• AutoFact: Oxygen-evolving enhancer protein 1, chloroplastic n=1 Tax=Fritillaria agrestis RepID=PSBO_FRIAG 9.0e-08
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: OEC 33 kDa subunit 7.061e-30
Internal
sp_v3.0_unigene141440 SustainPine v3.0 393
• AutoFact: D1 protease n=1 Tax=Nicotiana plumbaginifolia RepID=Q8S3I6_NICPL 4.0e-29
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Photosystem II D1 protease 3.384e-13
Internal
sp_v3.0_unigene142238 SustainPine v3.0 178
• AutoFact: Peptidyl-prolyl cis-trans isomerase n=1 Tax=Picea sitchensis RepID=A9NK21_PICSI 5.0e-20
• FL-Next: sp=Peptidyl-prolyl cis-trans isomerase; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Peptidyl-prolyl cis-trans isomerase 0.0
Internal
sp_v3.0_unigene142292 SustainPine v3.0 991
• AutoFact: Oxygen-evolving enhancer protein 2 n=1 Tax=Sequoia sempervirens RepID=E5FXB2_SEQSE 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: OEE2 5.03066e-42
Complete
sp_v3.0_unigene142424 SustainPine v3.0 578
• AutoFact: Ribulose bisphosphate carboxylase small chain PW9, chloroplastic n=52 Tax=Pooideae RepID=RBS2_WHEAT 0.0
• FL-Next: sp=Ribulose bisphosphate carboxylase small chain, chloroplastic; Pinus thunbergii (Japanese black pine) (Pinus thunbergiana). 0.0
• Sma3: Ribulose bisphosphate carboxylase small chain 0.0
C-terminus
sp_v3.0_unigene143508 SustainPine v3.0 292
• AutoFact: Oxygen-evolving enhancer protein 2, chloroplastic n=1 Tax=Fritillaria agrestis RepID=PSBP_FRIAG 8.0e-29
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: OEE2 1.60028e-42
Internal
sp_v3.0_unigene143658 SustainPine v3.0 430
• AutoFact: 26S protease regulatory subunit 6B homolog n=13 Tax=Embryophyta RepID=PRS6B_ARATH 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Proteasomal ATPase 1.574e-13
Putative N-terminus
sp_v3.0_unigene143804 SustainPine v3.0 575
• AutoFact: Oxygen-evolving enhancer protein 2 n=1 Tax=Sequoia sempervirens RepID=E5FXB2_SEQSE 9.0e-31
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: OEC 23 kDa subunit 3.72e-27
N-terminus
sp_v3.0_unigene145187 SustainPine v3.0 585
• AutoFact: Peptidyl-prolyl cis-trans isomerase n=4 Tax=Pinaceae RepID=C9EGT5_9CONI 0.0
• FL-Next: sp=Peptidyl-prolyl cis-trans isomerase; Pinus halepensis (Aleppo pine). 0.0
• Sma3: Peptidyl-prolyl cis-trans isomerase 0.0
N-terminus
sp_v3.0_unigene145320 SustainPine v3.0 374
• AutoFact: Fructose-bisphosphate aldolase n=2 Tax=Physcomitrella patens subsp. patens RepID=A9RX76_PHYPA 2.0e-18
• FL-Next: sp=Fructose-bisphosphate aldolase; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Fructose-bisphosphate aldolase 0.0
Putative C-terminus
sp_v3.0_unigene145452 SustainPine v3.0 329
• AutoFact: Fructose-bisphosphate aldolase n=2 Tax=Picea sitchensis RepID=A9NUC9_PICSI 1.0e-15
• FL-Next: sp=Fructose-bisphosphate aldolase; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Fructose-bisphosphate aldolase 0.0
C-terminus
sp_v3.0_unigene145562 SustainPine v3.0 354
• AutoFact: Fructose-bisphosphate aldolase n=2 Tax=Picea sitchensis RepID=A9NUC9_PICSI 3.0e-28
• FL-Next: sp=Fructose-bisphosphate aldolase; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Fructose-bisphosphate aldolase 0.0
Putative C-terminus
sp_v3.0_unigene145666 SustainPine v3.0 305
• AutoFact: Fructose-bisphosphate aldolase n=2 Tax=Picea sitchensis RepID=A9NUC9_PICSI 1.4013e-45
• FL-Next: sp=Fructose-bisphosphate aldolase; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Fructose-bisphosphate aldolase 0.0
Internal
sp_v3.0_unigene145916 SustainPine v3.0 492
• AutoFact: Ribulose bisphosphate carboxylase small chain, chloroplastic n=1 Tax=Pinus thunbergii RepID=RBS_PINTH 0.0
• FL-Next: sp=Ribulose bisphosphate carboxylase small chain, chloroplastic; Pinus thunbergii (Japanese black pine) (Pinus thunbergiana). 0.0
• Sma3: Ribulose bisphosphate carboxylase small chain 0.0
Complete
sp_v3.0_unigene146030 SustainPine v3.0 590
• AutoFact: Peptidyl-prolyl cis-trans isomerase n=1 Tax=Cryptomeria japonica RepID=Q1XG52_CRYJA 0.0
• FL-Next: sp=Peptidyl-prolyl cis-trans isomerase; Cryptomeria japonica (Japanese cedar) (Cupressus japonica). 0.0
• Sma3: Peptidyl-prolyl cis-trans isomerase 0.0
Complete
sp_v3.0_unigene146159 SustainPine v3.0 664
• AutoFact: Peptidyl-prolyl cis-trans isomerase n=1 Tax=Gerbera hybrid cultivar RepID=A8CYN7_GERHY 2.0e-26
• FL-Next: sp=Peptidyl-prolyl cis-trans isomerase; Pinus taeda (Loblolly pine). 0.0
• Sma3: Peptidyl-prolyl cis-trans isomerase 0.0
Complete
sp_v3.0_unigene146273 SustainPine v3.0 658
• AutoFact: Peptidyl-prolyl cis-trans isomerase n=3 Tax=Pinaceae RepID=A5HIY2_PINTA 0.0
• FL-Next: sp=Peptidyl-prolyl cis-trans isomerase; Pinus taeda (Loblolly pine). 0.0
• Sma3: Peptidyl-prolyl cis-trans isomerase 0.0
Complete

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain