Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: thylakoid lumen

Term: GO:0031977  Help

Source: GO from Sma3

Ontology: Cellular Component

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v3.0_unigene75296 SustainPine v3.0 270
• AutoFact: Oxygen-evolving enhancer protein 2, chloroplastic n=1 Tax=Cucumis sativus RepID=PSBP_CUCSA 4.0e-18
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: OEE2 5.852e-39
Misassembled
sp_v3.0_unigene75637 SustainPine v3.0 187
• AutoFact: Oxygen-evolving enhancer protein 1, chloroplastic n=1 Tax=Fritillaria agrestis RepID=PSBO_FRIAG 4.0e-08
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: OEE1 5.727e-31
Internal
sp_v3.0_unigene76790 SustainPine v3.0 273
• AutoFact: Cell division protein ftsh (Fragment) n=1 Tax=Oryza sativa Indica Group RepID=A6MZA7_ORYSI 2.0e-10
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Putative zinc dependent protease 1.991e-08
C-terminus
sp_v3.0_unigene77095 SustainPine v3.0 127
• AutoFact: Fructose-bisphosphate aldolase, class I (IC) n=1 Tax=Ostreococcus tauri RepID=Q01GD0_OSTTA 1.0e-11
• FL-Next: sp=Fructose-bisphosphate aldolase; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Fructose-bisphosphate aldolase 0.0
Internal
sp_v3.0_unigene77452 SustainPine v3.0 317
• AutoFact: Oxygen-evolving enhancer protein 1, chloroplastic n=1 Tax=Fritillaria agrestis RepID=PSBO_FRIAG 9.0e-18
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: OEE1 5.659e-34
Internal
sp_v3.0_unigene78428 SustainPine v3.0 233
• AutoFact: Ribulose bisphosphate carboxylase small chain n=1 Tax=Picea sitchensis RepID=A9NXP2_PICSI 4.0e-29
• FL-Next: sp=Ribulose bisphosphate carboxylase small chain; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Ribulose bisphosphate carboxylase small chain 0.0
Internal
sp_v3.0_unigene79566 SustainPine v3.0 249
• AutoFact: Peptidyl-prolyl cis-trans isomerase n=1 Tax=Picea sitchensis RepID=A9NLD0_PICSI 2.0e-31
• FL-Next: sp=Peptidyl-prolyl cis-trans isomerase; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Peptidyl-prolyl cis-trans isomerase 0.0
Internal
sp_v3.0_unigene80138 SustainPine v3.0 306
• AutoFact: Thylakoid lumenal 17.4 kDa protein, chloroplast, putative n=1 Tax=Ricinus communis RepID=B9SJT2_RICCO 4.0e-30
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene80275 SustainPine v3.0 318
• AutoFact: ATP-dependent zinc metalloprotease FTSH 11, chloroplastic/mitochondrial n=2 Tax=Arabidopsis RepID=FTSHB_ARATH 8.0e-30
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Cell division protein ftsH, putative 1.698e-14
Internal
sp_v3.0_unigene80822 SustainPine v3.0 195
• AutoFact: Fructose-bisphosphate aldolase n=1 Tax=Picea sitchensis RepID=B8LMQ9_PICSI 2.0e-07
• FL-Next: sp=Fructose-bisphosphate aldolase; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Fructose-bisphosphate aldolase 0.0
C-terminus
sp_v3.0_unigene81128 SustainPine v3.0 177
• AutoFact: oxygen-evolving enhancer protein 1 [Oryza sativa Indica Group] 2.0e-11
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: OEC 33 kDa subunit 2.385e-33
Misassembled
sp_v3.0_unigene81756 SustainPine v3.0 272
• AutoFact: ATP-dependent zinc metalloprotease FTSH 5, mitochondrial n=2 Tax=Oryza sativa RepID=FTSH5_ORYSJ 2.0e-16
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Cell division protease ftsH homolog 2.463e-13
Internal
sp_v3.0_unigene97482 SustainPine v3.0 282
• AutoFact: Ftsh-like protease n=1 Tax=Pisum sativum RepID=Q6A167_PEA 2.0e-33
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Cell division protein ftsH, putative 1.763e-14
Internal
sp_v3.0_unigene99968 SustainPine v3.0 942
• AutoFact: protease Do-like 8 [Arabidopsis thaliana] sp|Q9LU10.1|DEGP8_ARATH RecName: Full=Protease Do-like 8, chloroplastic; Flags: Precursor dbj|BAA98101.1| unnamed protein product [Arabidopsis thaliana] gb|AAL08237.1| AT5g39830/K13H13_10 [Arabidopsis thaliana] gb 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Protease degQ, putative 5.447e-08
Putative C-terminus
sp_v3.0_unigene100325 SustainPine v3.0 424
• AutoFact: Peptidyl-prolyl cis-trans isomerase (Fragment) n=1 Tax=Vitis vinifera RepID=D7U572_VITVI 0.0
• FL-Next: sp=Peptidyl-prolyl cis-trans isomerase; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Peptidyl-prolyl cis-trans isomerase 0.0
Putative C-terminus
sp_v3.0_unigene106344 SustainPine v3.0 243
• AutoFact: Protease Do-like 1, chloroplastic n=2 Tax=Arabidopsis RepID=DEGP1_ARATH 4.0e-34
• FL-Next: sp=Protease Do-like 1, chloroplastic; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene108624 SustainPine v3.0 255
• AutoFact: Mitochondrial respiratory chain complexes assembly protein AFG3, putative n=1 Tax=Ricinus communis RepID=B9SYC0_RICCO 3.0e-30
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Cell division protein ftsH, putative 2.805e-14
Internal
sp_v3.0_unigene115495 SustainPine v3.0 572
• AutoFact: ATP-dependent zinc metalloprotease FTSH 2, chloroplastic n=6 Tax=Poaceae RepID=FTSH2_ORYSJ 3.0e-14
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Putative zinc dependent protease 2.532e-08
Putative N-terminus
sp_v3.0_unigene119809 SustainPine v3.0 352
• AutoFact: Peptidyl-prolyl cis-trans isomerase n=2 Tax=Entamoeba RepID=B0ET56_ENTDI 0.0
• FL-Next: sp=Peptidyl-prolyl cis-trans isomerase; Pinus halepensis (Aleppo pine). 0.0
• Sma3: Peptidyl-prolyl cis-trans isomerase 0.0
Putative N-terminus
sp_v3.0_unigene121659 SustainPine v3.0 257
• AutoFact: Putative zinc dependent protease n=1 Tax=Trifolium pratense RepID=Q2PEX6_TRIPR 6.0e-12
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Putative zinc dependent protease 2.594e-08
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain