Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: thylakoid lumen

Term: GO:0031977  Help

Source: GO from Sma3

Ontology: Cellular Component

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v3.0_unigene57535 SustainPine v3.0 392
• AutoFact: Peptidyl-prolyl cis-trans isomerase (Fragment) n=1 Tax=Rhizoplaca chrysoleuca RepID=D6QT62_9LECA 0.0
• FL-Next: sp=Peptidyl-prolyl cis-trans isomerase; Picea abies (Norway spruce) (Picea excelsa). 0.0
• Sma3: Peptidyl-prolyl cis-trans isomerase 0.0
N-terminus
sp_v3.0_unigene57549 SustainPine v3.0 432
• AutoFact: protease Do-like 1 [Arabidopsis thaliana] sp|O22609.2|DEGP1_ARATH RecName: Full=Protease Do-like 1, chloroplastic; Flags: Precursor dbj|BAB02539.1| DegP protease precursor [Arabidopsis thaliana] gb|AAK62640.1| K16N12.18/K16N12.18 [Arabidopsis thaliana] gb 2.99878e-43
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Protease degQ, putative 9.832e-08
Internal
sp_v3.0_unigene58686 SustainPine v3.0 350
• AutoFact: Fructose-bisphosphate aldolase n=2 Tax=Picea sitchensis RepID=A9NP14_PICSI 2.0e-19
• FL-Next: sp=Fructose-bisphosphate aldolase; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Fructose-bisphosphate aldolase 0.0
Putative N-terminus
sp_v3.0_unigene58928 SustainPine v3.0 180
• AutoFact: Peptidyl-prolyl cis-trans isomerase n=4 Tax=Pinaceae RepID=C9EGT5_9CONI 1.0e-18
• FL-Next: sp=Peptidyl-prolyl cis-trans isomerase; Pinus halepensis (Aleppo pine). 0.0
• Sma3: Peptidyl-prolyl cis-trans isomerase 0.0
Putative C-terminus
sp_v3.0_unigene61219 SustainPine v3.0 376
• AutoFact: Os08g0382400 protein n=3 Tax=Oryza sativa RepID=Q6YW78_ORYSJ 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Peptidyl-prolyl cis-trans isomerase chloroplast 4.107e-09
Internal
sp_v3.0_unigene61847 SustainPine v3.0 345
• AutoFact: Violaxanthin de-epoxidase n=1 Tax=Camellia sinensis RepID=Q8S4C2_CAMSI 1.0e-29
• FL-Next: sp=Violaxanthin de-epoxidase, chloroplastic; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: Violaxanthin de-epoxidase 3.497e-34
Internal
sp_v3.0_unigene65588 SustainPine v3.0 221
• AutoFact: Peptidyl-prolyl cis-trans isomerase n=4 Tax=Pinaceae RepID=C9EGT5_9CONI 2.0e-22
• FL-Next: sp=Peptidyl-prolyl cis-trans isomerase; Pinus halepensis (Aleppo pine). 0.0
• Sma3: Peptidyl-prolyl cis-trans isomerase 0.0
Putative C-terminus
sp_v3.0_unigene65795 SustainPine v3.0 170
• AutoFact: Peptidyl-prolyl cis-trans isomerase n=4 Tax=Pinaceae RepID=C9EGT5_9CONI 4.0e-16
• FL-Next: sp=Peptidyl-prolyl cis-trans isomerase; Pinus halepensis (Aleppo pine). 0.0
• Sma3: Peptidyl-prolyl cis-trans isomerase 0.0
Putative C-terminus
sp_v3.0_unigene67257 SustainPine v3.0 349
• AutoFact: chloroplast oxygen-evolving enhancer protein 1 [Leymus chinensis] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: OEE1 6.755e-40
C-terminus
sp_v3.0_unigene67569 SustainPine v3.0 378
• AutoFact: Ferredoxin-NADP(H) oxidoreductase n=1 Tax=Triticum aestivum RepID=Q8RVZ8_WHEAT 8.0e-19
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Ferredoxin--NADP reductase 3.66398e-41
C-terminus
sp_v3.0_unigene67621 SustainPine v3.0 406
• AutoFact: Ribulose bisphosphate carboxylase small chain PW9, chloroplastic n=52 Tax=Pooideae RepID=RBS2_WHEAT 0.0
• FL-Next: sp=Ribulose bisphosphate carboxylase small chain; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Ribulose bisphosphate carboxylase small chain 0.0
C-terminus
sp_v3.0_unigene68361 SustainPine v3.0 281
• AutoFact: Ribulose bisphosphate carboxylase small chain n=3 Tax=Triticeae RepID=Q9FRZ3_WHEAT 8.0e-40
• FL-Next: sp=Ribulose bisphosphate carboxylase small chain, chloroplastic; Pinus thunbergii (Japanese black pine) (Pinus thunbergiana). 0.0
• Sma3: Ribulose bisphosphate carboxylase small chain 0.0
Internal
sp_v3.0_unigene70111 SustainPine v3.0 360
• AutoFact: ferredoxin-NADP(H) oxidoreductase [Triticum aestivum] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Ferredoxin--NADP reductase 0.0
Internal
sp_v3.0_unigene71597 SustainPine v3.0 251
• AutoFact: peptidylprolyl isomerase [Arabidopsis thaliana] sp|Q9LM71.2|FKBP1_ARATH RecName: Full=Probable FKBP-type peptidyl-prolyl cis-trans isomerase 1, chloroplastic; Short=PPIase; AltName: Full=Rotamase; Flags: Precursor dbj|BAC42074.1| unknown protein [Arabidop 8.0e-22
• FL-Next: sp=Peptidyl-prolyl cis-trans isomerase; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
C-terminus
sp_v3.0_unigene73116 SustainPine v3.0 133
• AutoFact: Protease degQ, putative n=1 Tax=Ricinus communis RepID=B9SF71_RICCO 1.0e-08
• FL-Next: sp=Protease Do-like 1, chloroplastic; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene73549 SustainPine v3.0 406
• AutoFact: Ribulose bisphosphate carboxylase small chain, chloroplastic n=1 Tax=Pinus thunbergii RepID=RBS_PINTH 1.4013e-45
• FL-Next: sp=Ribulose bisphosphate carboxylase small chain, chloroplastic; Pinus thunbergii (Japanese black pine) (Pinus thunbergiana). 0.0
• Sma3: Ribulose bisphosphate carboxylase small chain 0.0
N-terminus
sp_v3.0_unigene73593 SustainPine v3.0 418
• AutoFact: Fructose-bisphosphate aldolase n=2 Tax=Picea sitchensis RepID=A9NUC9_PICSI 7.0e-39
• FL-Next: sp=Fructose-bisphosphate aldolase; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Fructose-bisphosphate aldolase 0.0
C-terminus
sp_v3.0_unigene73759 SustainPine v3.0 397
• AutoFact: Fructose-bisphosphate aldolase n=1 Tax=Picea sitchensis RepID=B8LMQ9_PICSI 1.0e-35
• FL-Next: sp=Fructose-bisphosphate aldolase; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Fructose-bisphosphate aldolase 0.0
Misassembled
sp_v3.0_unigene73876 SustainPine v3.0 208
• AutoFact: FtsH-like protein (Fragment) n=17 Tax=Triticeae RepID=Q6DVR3_HORSP 3.0e-28
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Cell division protease ftsH homolog 2.935e-13
Internal
sp_v3.0_unigene75103 SustainPine v3.0 426
• AutoFact: Peptidyl-prolyl cis-trans isomerase n=2 Tax=Sclerotiniaceae RepID=A7F0U7_SCLS1 0.0
• FL-Next: sp=Peptidyl-prolyl cis-trans isomerase; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Peptidyl-prolyl cis-trans isomerase 0.0
Putative C-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain