Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: small-subunit processome

Term: GO:0032040  Help

Source: GO from Sma3

Ontology: Cellular Component


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene62042 SustainPine v3.0 242
AutoFact: transducin/WD40 domain-containing protein [Arabidopsis thaliana] emb|CAC01839.1| WD40-repeat protein [Arabidopsis thaliana] gb|AED92333.1| transducin/WD40 domain-containing protein [Arabidopsis thaliana] 4.0e-11
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Internal
sp_v3.0_unigene63736 SustainPine v3.0 265
AutoFact: transducin/WD40 domain-containing protein [Arabidopsis thaliana] emb|CAC01839.1| WD40-repeat protein [Arabidopsis thaliana] gb|AED92333.1| transducin/WD40 domain-containing protein [Arabidopsis thaliana] 2.0e-06
FL-Next: tr=Predicted protein; Physcomitrella patens subsp. patens (Moss). 0.0
Internal
sp_v3.0_unigene63969 SustainPine v3.0 241
AutoFact: transducin/WD40 domain-containing protein [Arabidopsis thaliana] emb|CAC01839.1| WD40-repeat protein [Arabidopsis thaliana] gb|AED92333.1| transducin/WD40 domain-containing protein [Arabidopsis thaliana] 1.0e-16
FL-Next: tr=Predicted protein; subsp. trichocarpa). 0.0
Internal
sp_v3.0_unigene73002 SustainPine v3.0 220
AutoFact: transducin/WD40 domain-containing protein [Arabidopsis thaliana] gb|AAL24132.1| putative WD-repeat membrane protein [Arabidopsis thaliana] gb|AAM20284.1| putative WD-repeat membrane protein [Arabidopsis thaliana] gb|AEE82445.1| transducin/WD40 domain-cont 3.0e-17
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Putative N-terminus
sp_v3.0_unigene96691 SustainPine v3.0 1390
AutoFact: putative U3 small nucleolar RNA-associated protein 11 [Arabidopsis thaliana] sp|Q9M223.1|UTP11_ARATH RecName: Full=Probable U3 small nucleolar RNA-associated protein 11; Short=U3 snoRNA-associated protein 11 emb|CAB81822.1| putative protein [Arabidopsis t 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: U3 snoRNA-associated protein 11 1.39e-09
Complete
sp_v3.0_unigene96843 SustainPine v3.0 551
AutoFact: transducin/WD40 domain-containing protein [Arabidopsis thaliana] emb|CAC01839.1| WD40-repeat protein [Arabidopsis thaliana] gb|AED92333.1| transducin/WD40 domain-containing protein [Arabidopsis thaliana] 2.0e-15
FL-Next: tr=Predicted protein; Hordeum vulgare var. distichum (Two-rowed barley). 0.0
Internal
sp_v3.0_unigene96909 SustainPine v3.0 230
AutoFact: transducin/WD40 domain-containing protein [Arabidopsis thaliana] gb|AAL24132.1| putative WD-repeat membrane protein [Arabidopsis thaliana] gb|AAM20284.1| putative WD-repeat membrane protein [Arabidopsis thaliana] gb|AEE82445.1| transducin/WD40 domain-cont 2.0e-25
FL-Next: tr=Predicted protein; subsp. trichocarpa). 0.0
Internal
sp_v3.0_unigene99708 SustainPine v3.0 1113
AutoFact: transducin/WD40 domain-containing protein [Arabidopsis thaliana] emb|CAC01839.1| WD40-repeat protein [Arabidopsis thaliana] gb|AED92333.1| transducin/WD40 domain-containing protein [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
N-terminus
sp_v3.0_unigene101009 SustainPine v3.0 365
AutoFact: transducin/WD40 domain-containing protein [Arabidopsis thaliana] gb|AAL24132.1| putative WD-repeat membrane protein [Arabidopsis thaliana] gb|AAM20284.1| putative WD-repeat membrane protein [Arabidopsis thaliana] gb|AEE82445.1| transducin/WD40 domain-cont 7.0e-15
FL-Next: tr=Predicted protein; subsp. trichocarpa). 0.0
Internal
sp_v3.0_unigene105331 SustainPine v3.0 294
AutoFact: U3 small nucleolar RNA-associated protein, putative n=1 Tax=Ricinus communis RepID=B9S245_RICCO 5.0e-27
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene108541 SustainPine v3.0 712
AutoFact: transducin/WD40 domain-containing protein [Arabidopsis thaliana] dbj|BAB02349.1| unnamed protein product [Arabidopsis thaliana] gb|AEE76521.1| transducin/WD40 domain-containing protein [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Putative N-terminus
sp_v3.0_unigene127235 SustainPine v3.0 820
AutoFact: Probable U3 small nucleolar RNA-associated protein 11 n=2 Tax=Arabidopsis RepID=UTP11_ARATH 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: U3 snoRNA-associated protein 11 1.616e-09
Complete
sp_v3.0_unigene127238 SustainPine v3.0 1183
AutoFact: putative cinnamoyl-CoA reductase [Oryza sativa Japonica Group] 1.0e-18
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Cinnamoyl-CoA reductase, putative 6.524e-07
N-terminus
sp_v3.0_unigene128228 SustainPine v3.0 608
AutoFact: Rossmann-fold NAD(P)-binding domain-containing protein [Arabidopsis thaliana] gb|AAC63661.2| putative cinnamoyl CoA reductase [Arabidopsis thaliana] gb|ABK32183.1| At2g23910 [Arabidopsis thaliana] gb|AEC07501.1| Rossmann-fold NAD(P)-binding domain-contain 6.0e-27
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
C-terminus
sp_v3.0_unigene132263 SustainPine v3.0 247
AutoFact: transducin/WD40 domain-containing protein [Arabidopsis thaliana] gb|AAL24132.1| putative WD-repeat membrane protein [Arabidopsis thaliana] gb|AAM20284.1| putative WD-repeat membrane protein [Arabidopsis thaliana] gb|AEE82445.1| transducin/WD40 domain-cont 1.0e-21
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Internal
sp_v3.0_unigene139941 SustainPine v3.0 417
AutoFact: putative cinnamoyl-CoA reductase [Oryza sativa Japonica Group] 1.0e-29
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Cinnamoyl-CoA reductase, putative 1.506e-06
Internal
sp_v3.0_unigene143590 SustainPine v3.0 427
AutoFact: Probable U3 small nucleolar RNA-associated protein 11 n=2 Tax=Arabidopsis RepID=UTP11_ARATH 2.0e-06
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Putative N-terminus
sp_v3.0_unigene144318 SustainPine v3.0 509
AutoFact: WD-repeat protein, putative n=1 Tax=Ricinus communis RepID=B9T842_RICCO 3.0e-40
FL-Next: tr=Putative uncharacterized protein Sb10g025320; Sorghum bicolor (Sorghum) (Sorghum vulgare). 0.0
C-terminus
sp_v3.0_unigene183676 SustainPine v3.0 767
AutoFact: WD-repeat protein, putative 1.00053e-42
FL-Next: tr=Predicted protein; subsp. trichocarpa). 0.0
C-terminus
sp_v3.0_unigene203419 SustainPine v3.0 332
AutoFact: Unassigned protein 6.0e-07
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain