Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: embryonic pattern specification

Term: GO:0009880  Help

Source: GO from Sma3

Ontology: Biological Process


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene53391 SustainPine v3.0 343
AutoFact: Class III HD-Zip protein HDZ33 n=4 Tax=Pinaceae RepID=Q0Q419_PINTA 2.0e-20
FL-Next: tr=Class III HD-Zip protein HDZ33; Pinus taeda (Loblolly pine). 0.0
Sma3: Class III homeodomain-leucine zipper protein C3HDZ1 2.574e-29
N-terminus
sp_v3.0_unigene56154 SustainPine v3.0 258
AutoFact: CAF protein n=17 Tax=Camelineae RepID=Q56Y50_ARATH 3.0e-22
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Dicer-like protein 4.055e-16
Internal
sp_v3.0_unigene56263 SustainPine v3.0 360
AutoFact: Class III homeodomain-leucine zipper protein C3HDZ1 n=1 Tax=Phaeoceros carolinianus RepID=Q20BM0_9EMBR 4.0e-32
FL-Next: tr=Class III HD-Zip protein HDZ33; Pinus taeda (Loblolly pine). 0.0
Sma3: Class III homeodomain-leucine zipper protein C3HDZ1 1.536e-33
Internal
sp_v3.0_unigene59151 SustainPine v3.0 450
AutoFact: Homeobox domain containing protein 5.0e-09
FL-Next: tr=Class III homeodomain-leucine zipper protein C3HDZ1; Taxus globosa. 0.0
Sma3: Class III homeodomain-leucine zipper protein C3HDZ1 2.864e-33
Internal
sp_v3.0_unigene60453 SustainPine v3.0 172
AutoFact: Helicase, C-terminal; Argonaute and Dicer protein, PAZ; Ribonuclease III, bacterial n=1 Tax=Medicago truncatula RepID=Q2HTA7_MEDTR 4.0e-19
FL-Next: sp=Endoribonuclease Dicer homolog 1; Oryza sativa subsp. japonica (Rice). 0.0
Sma3: Dicer-like protein 3.455e-10
Internal
sp_v3.0_unigene63969 SustainPine v3.0 241
AutoFact: transducin/WD40 domain-containing protein [Arabidopsis thaliana] emb|CAC01839.1| WD40-repeat protein [Arabidopsis thaliana] gb|AED92333.1| transducin/WD40 domain-containing protein [Arabidopsis thaliana] 1.0e-16
FL-Next: tr=Predicted protein; subsp. trichocarpa). 0.0
Internal
sp_v3.0_unigene64589 SustainPine v3.0 235
AutoFact: RecName: Full=Endoribonuclease Dicer homolog 1; AltName: Full=Dicer-like protein 1; Short=OsDCL1 gb|AAM52322.1|AC105363_11 Putative CAF protein [Oryza sativa Japonica Group] gb|ABF93701.1| DEAD/DEAH box helicase carpel factory, putative, expressed [Oryza 5.0e-08
FL-Next: sp=Endoribonuclease Dicer homolog 1; Oryza sativa subsp. japonica (Rice). 0.0
Internal
sp_v3.0_unigene68168 SustainPine v3.0 182
AutoFact: Pattern formation protein, putative n=1 Tax=Ricinus communis RepID=B9S916_RICCO 4.0e-19
FL-Next: sp=Pattern formation protein EMB30; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Pattern formation protein, putative 1.426e-08
Internal
sp_v3.0_unigene68688 SustainPine v3.0 153
AutoFact: Dicer-like protein n=1 Tax=Populus trichocarpa RepID=B9GRS6_POPTR 8.0e-17
FL-Next: sp=Endoribonuclease Dicer homolog 1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene70399 SustainPine v3.0 285
AutoFact: Ethylene-responsive transcription factor 4 n=4 Tax=Nicotiana RepID=ERF4_NICSY 2.0e-19
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: AP2/ERF domain-containing transcription factor 0.0
Putative N-terminus
sp_v3.0_unigene71231 SustainPine v3.0 373
AutoFact: Ethylene responsive element binding protein C1 n=1 Tax=Capsicum annuum RepID=Q32W75_CAPAN 8.0e-25
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: AP2/ERF domain-containing transcription factor 0.0
N-terminus
sp_v3.0_unigene72506 SustainPine v3.0 159
AutoFact: Auxin-induced protein 5 n=1 Tax=Pinus taeda RepID=Q7XYT2_PINTA 2.0e-19
FL-Next: tr=Auxin-induced protein 5; Pinus taeda (Loblolly pine). 0.0
Sma3: Aux/IAA protein 6.718e-30
Putative C-terminus
sp_v3.0_unigene75220 SustainPine v3.0 244
AutoFact: Pattern formation protein, putative n=1 Tax=Ricinus communis RepID=B9SVJ6_RICCO 3.0e-23
FL-Next: sp=Pattern formation protein EMB30; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Pattern formation protein, putative 4.064e-12
Internal
sp_v3.0_unigene76465 SustainPine v3.0 270
AutoFact: Endoribonuclease Dicer homolog 3a n=1 Tax=Oryza sativa Japonica Group RepID=DCL3A_ORYSJ 1.0e-28
FL-Next: sp=Endoribonuclease Dicer homolog 3a; Oryza sativa subsp. japonica (Rice). 0.0
Sma3: Ribonuclease III, putative 1.236e-07
Internal
sp_v3.0_unigene79712 SustainPine v3.0 202
AutoFact: Pattern formation protein, putative n=1 Tax=Ricinus communis RepID=B9S916_RICCO 4.0e-22
FL-Next: sp=Pattern formation protein EMB30; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Pattern formation protein, putative 1.902e-08
Internal
sp_v3.0_unigene80303 SustainPine v3.0 175
AutoFact: Endoribonuclease Dicer homolog 2 n=2 Tax=Arabidopsis thaliana RepID=DCL2_ARATH 2.0e-10
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Dicer-like protein 1.464e-13
Internal
sp_v3.0_unigene94123 SustainPine v3.0 845
AutoFact: Dicer-like 3 n=1 Tax=Physcomitrella patens RepID=B3SRQ0_9BRYO 5.00264e-43
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Dicer-like protein 3.916e-13
C-terminus
sp_v3.0_unigene96843 SustainPine v3.0 551
AutoFact: transducin/WD40 domain-containing protein [Arabidopsis thaliana] emb|CAC01839.1| WD40-repeat protein [Arabidopsis thaliana] gb|AED92333.1| transducin/WD40 domain-containing protein [Arabidopsis thaliana] 2.0e-15
FL-Next: tr=Predicted protein; Hordeum vulgare var. distichum (Two-rowed barley). 0.0
Internal
sp_v3.0_unigene99395 SustainPine v3.0 546
AutoFact: Dicer-like protein n=1 Tax=Populus trichocarpa RepID=B9GRS6_POPTR 0.0
FL-Next: sp=Endoribonuclease Dicer homolog 1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Dicer-like protein 4.58e-20
Internal
sp_v3.0_unigene99602 SustainPine v3.0 673
AutoFact: protein dicer-like 2 [Arabidopsis thaliana] ref|NP_001189798.1| protein dicer-like 2 [Arabidopsis thaliana] sp|Q3EBC8.2|DCL2_ARATH RecName: Full=Endoribonuclease Dicer homolog 2; AltName: Full=Dicer-like protein 2; Short=AtDCL2 gb|AEE73924.1| protein dice 2.0e-37
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Dicer-like protein 6.474e-10
C-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain