Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: transcription cofactor activity

Term: GO:0003712  Help

Source: GO from Sma3

Ontology: Molecular Function


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene55250 SustainPine v3.0 259
AutoFact: Unassigned protein
FL-Next: tr=Uncharacterized protein; Glycine max (Soybean) (Glycine hispida). 0.0
Putative N-terminus
sp_v3.0_unigene58015 SustainPine v3.0 470
AutoFact: RVT_1 domain containing protein 2.0e-19
FL-Next: sp=RNA-directed DNA polymerase homolog; berteroana). Mitochondrion. 0.0
Sma3: Retrotransposon protein, putative, Ty3-gypsy subclass 1.108e-07
Putative Complete
sp_v3.0_unigene60444 SustainPine v3.0 353
AutoFact: RVT_1 domain containing protein 2.0e-12
FL-Next: sp=RNA-directed DNA polymerase homolog; berteroana). Mitochondrion. 0.0
Sma3: Retrotransposon protein, putative, Ty3-gypsy subclass 8.6e-08
Putative Complete
sp_v3.0_unigene67495 SustainPine v3.0 256
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Internal
sp_v3.0_unigene70057 SustainPine v3.0 280
AutoFact: RVT_1 domain containing protein 1.0e-05
FL-Next: sp=RNA-directed DNA polymerase homolog; berteroana). Mitochondrion. 0.0
Putative N-terminus
sp_v3.0_unigene71659 SustainPine v3.0 315
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Chromosome chr13 scaffold_120, whole genome shotgun sequence 4.505e-10
N-terminus
sp_v3.0_unigene72130 SustainPine v3.0 280
AutoFact: Metallothio multi-domain protein 2.0e-06
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Sma3: CTV.22 1.949e-06
Internal
sp_v3.0_unigene79261 SustainPine v3.0 208
AutoFact: Unassigned protein 1.0e-15
FL-Next: tr=Uncharacterized protein; Glycine max (Soybean) (Glycine hispida). 0.0
Internal
sp_v3.0_unigene95497 SustainPine v3.0 514
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
N-terminus
sp_v3.0_unigene100837 SustainPine v3.0 1088
AutoFact: pfam09606, Med15, ARC105 or Med15 subunit of Mediator complex non-fungal 3.0e-24
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: CTV.22 5.848e-06
Putative Complete
sp_v3.0_unigene103439 SustainPine v3.0 368
AutoFact: Transcription cofactor, putative n=1 Tax=Ricinus communis RepID=B9RHR9_RICCO 0.0
FL-Next: sp=Histone acetyltransferase HAC1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Histone acetyltransferase 2.336e-11
Internal
sp_v3.0_unigene104522 SustainPine v3.0 253
AutoFact: Transcription initiation factor TFIID, subunit TAF1 n=1 Tax=Physcomitrella patens subsp. patens RepID=A9TKZ9_PHYPA 5.0e-31
FL-Next: sp=Transcription initiation factor TFIID subunit 1-A; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Transcription initiation factor TFIID, subunit TAF1 4.688e-09
Internal
sp_v3.0_unigene105091 SustainPine v3.0 484
AutoFact: Transcription cofactor, putative n=1 Tax=Ricinus communis RepID=B9RHR9_RICCO 5.0e-29
FL-Next: sp=Histone acetyltransferase HAC1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: p300/CBP acetyltransferase-related protein 5.379e-09
Putative C-terminus
sp_v3.0_unigene123505 SustainPine v3.0 323
AutoFact: RecName: Full=Transcription initiation factor TFIID subunit 1; AltName: Full=TAFII250 dbj|BAD37451.1| putative HAC13 protein [Oryza sativa Japonica Group] dbj|BAD37604.1| putative HAC13 protein [Oryza sativa Japonica Group] 1.0e-27
FL-Next: sp=Transcription initiation factor TFIID subunit 1; Oryza sativa subsp. japonica (Rice). 0.0
Sma3: Transcription initiation factor TFIID, subunit TAF1 4.688e-09
Internal
sp_v3.0_unigene125390 SustainPine v3.0 273
AutoFact: Transcription initiation factor TFIID subunit 1 n=5 Tax=Oryza sativa RepID=TAF1_ORYSJ 3.0e-28
FL-Next: sp=Transcription initiation factor TFIID subunit 1; Oryza sativa subsp. japonica (Rice). 0.0
Sma3: Transcription initiation factor TFIID, subunit TAF1 4.823e-09
Internal
sp_v3.0_unigene130086 SustainPine v3.0 331
AutoFact: Activator_LAG-3 multi-domain protein 2.0e-08
Sma3: CTV.22 3.899e-06
coding
sp_v3.0_unigene133177 SustainPine v3.0 174
AutoFact: Transcription cofactor, putative n=1 Tax=Ricinus communis RepID=B9RHR9_RICCO 6.0e-22
FL-Next: Isoform 2 of Histone acetyltransferase HAC1 OS=Arabidopsis thaliana GN=HAC1 0.0
Sma3: p300/CBP acetyltransferase-related protein 5.451e-09
Internal
sp_v3.0_unigene137218 SustainPine v3.0 278
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein Sb06g013680; Sorghum bicolor (Sorghum) (Sorghum vulgare). 0.0
Internal
sp_v3.0_unigene138384 SustainPine v3.0 270
AutoFact: Unassigned protein
FL-Next: sp=Mediator of RNA polymerase II transcription subunit 15a; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Putative uncharacterized protein At1g15780 7.31e-06
Internal
sp_v3.0_unigene140406 SustainPine v3.0 1203
AutoFact: pfam09606, Med15, ARC105 or Med15 subunit of Mediator complex non-fungal 2.0e-24
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Chromosome chr13 scaffold_120, whole genome shotgun sequence 3.854e-07
Putative Complete

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain