Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: red or far-red light signaling pathway

Term: GO:0010017  Help

Source: GO from Sma3

Ontology: Biological Process


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene141212 SustainPine v3.0 881
AutoFact: 26S proteasome non-ATPase regulatory subunit 14 n=27 Tax=Chordata RepID=PSDE_HUMAN 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: 26S proteasome regulatory subunit 9.354e-10
Complete
sp_v3.0_unigene150032 SustainPine v3.0 127
AutoFact: Nucleoside diphosphate kinase n=1 Tax=Kluyveromyces lactis NRRL Y-1140 RepID=Q6CS60_KLULA 1.0e-11
FL-Next: sp=Nucleoside diphosphate kinase; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Nucleoside diphosphate kinase 0.0
Internal
sp_v3.0_unigene150270 SustainPine v3.0 317
AutoFact: PREDICTED: similar to putative nucleoside diphosphate kinase n=1 Tax=Tribolium castaneum RepID=UPI0001758086 9.0e-34
FL-Next: sp=Nucleoside diphosphate kinase; Pinus pinaster (Maritime pine). 0.0
Sma3: Nucleoside diphosphate kinase 0.0
C-terminus
sp_v3.0_unigene150741 SustainPine v3.0 383
AutoFact: Nucleoside diphosphate kinase n=1 Tax=Acaryochloris marina MBIC11017 RepID=NDK_ACAM1 7.0e-39
FL-Next: sp=Nucleoside diphosphate kinase; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Nucleoside diphosphate kinase 0.0
C-terminus
sp_v3.0_unigene151569 SustainPine v3.0 296
AutoFact: Nucleoside diphosphate kinase n=1 Tax=Bacillus halodurans RepID=NDK_BACHD 1.0e-31
FL-Next: sp=Nucleoside diphosphate kinase; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Nucleoside diphosphate kinase 0.0
Internal
sp_v3.0_unigene152081 SustainPine v3.0 233
AutoFact: Nucleoside diphosphate kinase n=1 Tax=Ostreococcus lucimarinus CCE9901 RepID=A4S6Z0_OSTLU 1.0e-20
FL-Next: sp=Nucleoside diphosphate kinase; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Nucleoside diphosphate kinase 0.0
C-terminus
sp_v3.0_unigene152098 SustainPine v3.0 488
AutoFact: Nucleoside diphosphate kinase n=1 Tax=Cyanothece sp. PCC 7425 RepID=NDK_CYAP4 0.0
FL-Next: sp=Nucleoside diphosphate kinase; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Nucleoside diphosphate kinase 0.0
Putative Complete
sp_v3.0_unigene152256 SustainPine v3.0 375
AutoFact: Nucleoside diphosphate kinase n=1 Tax=Naegleria gruberi RepID=D2VTC4_NAEGR 0.0
FL-Next: sp=Nucleoside diphosphate kinase; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Nucleoside diphosphate kinase 0.0
Internal
sp_v3.0_unigene152726 SustainPine v3.0 335
AutoFact: Ubiquitin carrier protein n=2 Tax=Chlamydomonadales RepID=D8UI35_VOLCA 3.9937e-43
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Ubiquitin carrier protein 0.0
C-terminus
sp_v3.0_unigene152992 SustainPine v3.0 452
AutoFact: Ubiquitin-conjugating enzyme E2 n=1 Tax=Dictyostelium fasciculatum RepID=F4Q0Q7_9MYCE 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Ubiquitin carrier protein 0.0
C-terminus
sp_v3.0_unigene153482 SustainPine v3.0 528
AutoFact: Nucleoside diphosphate kinase n=4 Tax=Trichocomaceae RepID=NDK_ASPFU 0.0
FL-Next: sp=Nucleoside diphosphate kinase; Pinus pinaster (Maritime pine). 0.0
Sma3: Nucleoside diphosphate kinase 0.0
C-terminus
sp_v3.0_unigene153632 SustainPine v3.0 398
AutoFact: similar to JAB; K09613 COP9 signalosome complex subunit 5 [EC:3.4.-.-] 9.80909e-45
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: COP9 signalosome complex subunit 5b 8.858e-09
Internal
sp_v3.0_unigene154134 SustainPine v3.0 283
AutoFact: Nucleoside diphosphate kinase n=1 Tax=Salmo salar RepID=B5XE35_SALSA 8.0e-27
FL-Next: sp=Nucleoside diphosphate kinase; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Nucleoside diphosphate kinase 0.0
Putative C-terminus
sp_v3.0_unigene154170 SustainPine v3.0 416
AutoFact: Nucleoside diphosphate kinase n=4 Tax=Trichocomaceae RepID=NDK_ASPFU 3.0e-40
FL-Next: sp=Nucleoside diphosphate kinase; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Nucleoside diphosphate kinase 0.0
C-terminus
sp_v3.0_unigene154202 SustainPine v3.0 544
AutoFact: Nucleoside diphosphate kinase 1 n=1 Tax=Camellia sinensis RepID=F4YFB4_CAMSI 0.0
FL-Next: sp=Nucleoside diphosphate kinase; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Nucleoside diphosphate kinase 0.0
Complete
sp_v3.0_unigene154378 SustainPine v3.0 254
AutoFact: Nucleoside diphosphate kinase n=1 Tax=Phaeodactylum tricornutum CCAP 1055/1 RepID=B7FR80_PHATC 1.0e-18
FL-Next: sp=Nucleoside diphosphate kinase; Pinus pinaster (Maritime pine). 0.0
Sma3: Nucleoside diphosphate kinase 0.0
Internal
sp_v3.0_unigene154393 SustainPine v3.0 315
AutoFact: Ubiquitin carrier protein n=2 Tax=Chlamydomonadales RepID=D8UI35_VOLCA 3.0e-23
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Ubiquitin carrier protein 4.96e-22
N-terminus
sp_v3.0_unigene154920 SustainPine v3.0 378
AutoFact: COP9 signalosome complex subunit 1 n=1 Tax=Dictyostelium purpureum RepID=F1A0N1_DICPU 1.0e-30
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: COP9 signalosome complex subunit 1 3.642e-09
C-terminus
sp_v3.0_unigene155158 SustainPine v3.0 419
AutoFact: Proteasome component region PCI domain-containing protein n=1 Tax=Dictyostelium fasciculatum RepID=F4Q6F9_9MYCE 2.0e-40
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: COP9 signalosome complex subunit 4 3.151e-09
Putative C-terminus
sp_v3.0_unigene155162 SustainPine v3.0 484
AutoFact: Nucleoside diphosphate kinase n=2 Tax=Pyrenophora RepID=B2WLH9_PYRTR 0.0
FL-Next: sp=Nucleoside diphosphate kinase; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Nucleoside diphosphate kinase 0.0
N-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain