Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: red or far-red light signaling pathway

Term: GO:0010017  Help

Source: GO from Sma3

Ontology: Biological Process


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene106070 SustainPine v3.0 475
AutoFact: Transcription factor SPATULA n=2 Tax=Arabidopsis RepID=SPT_ARATH 9.0e-10
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Helix-loop-helix DNA-binding domain containing protein, expressed 5.908e-06
N-terminus
sp_v3.0_unigene106227 SustainPine v3.0 409
AutoFact: putative COP1, constitutive photomorphogenesis 1 [Oryza sativa Japonica Group] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: COP1 regulatory protein 1.256e-11
Putative N-terminus
sp_v3.0_unigene106556 SustainPine v3.0 427
AutoFact: SPA1-related 4 protein [Arabidopsis thaliana] ref|NP_849802.1| SPA1-related 4 protein [Arabidopsis thaliana] sp|Q94BM7.1|SPA4_ARATH RecName: Full=Protein SPA1-RELATED 4 gb|AAK64180.1| putative phytochrome A supressor spa1 protein [Arabidopsis thaliana] gb 4.2039e-45
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Ubiquitin ligase protein cop1, putative 7.641e-14
Putative N-terminus
sp_v3.0_unigene106933 SustainPine v3.0 382
AutoFact: bHLH transcription factor PTF1-like [Oryza sativa Japonica Group] 2.0e-14
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: BHLH transcription factor 1.252e-19
N-terminus
sp_v3.0_unigene107126 SustainPine v3.0 198
AutoFact: deetiolated 1-like protein [Solanum tuberosum] 8.0e-15
FL-Next: sp=Light-mediated development protein DET1; Solanum lycopersicum (Tomato) (Lycopersicon esculentum). 0.0
Sma3: Light-mediated development protein DET1 1.411e-09
Internal
sp_v3.0_unigene107322 SustainPine v3.0 365
AutoFact: Phytochrome N (Fragment) n=12 Tax=Pinaceae RepID=Q9FSD5_PINSY 0.0
FL-Next: sp=Phytochrome; Picea abies (Norway spruce) (Picea excelsa). 0.0
Sma3: Phytochrome A 1.626e-19
Internal
sp_v3.0_unigene113915 SustainPine v3.0 456
AutoFact: COP9 signalosome complex subunit 2 [Arabidopsis thaliana] sp|Q8W207.1|CSN2_ARATH RecName: Full=COP9 signalosome complex subunit 2; Short=Signalosome subunit 2; AltName: Full=Protein FUSCA 12 gb|AAL58101.1|AF395058_1 CSN complex subunit 2 [Arabidopsis thal 6.0e-37
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: COP9 signalosome complex subunit 2 2.893e-13
N-terminus
sp_v3.0_unigene114534 SustainPine v3.0 342
AutoFact: R2R3-MYB transcription factor n=1 Tax=Pinus taeda RepID=Q6V0J3_PINTA 6.0e-20
FL-Next: tr=R2R3-MYB transcription factor; Pinus taeda (Loblolly pine). 0.0
Sma3: Myb-related protein Hv33 1.353e-13
N-terminus
sp_v3.0_unigene120678 SustainPine v3.0 269
AutoFact: Ubiquitin ligase protein cop1, putative n=1 Tax=Ricinus communis RepID=B9T5N2_RICCO 2.0e-23
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Ubiquitin ligase protein cop1, putative 4.548e-11
Internal
sp_v3.0_unigene124056 SustainPine v3.0 386
AutoFact: Phytochrome (Fragment) n=1 Tax=Pseudotsuga menziesii RepID=Q40917_PSEMZ 0.0
FL-Next: sp=Phytochrome; Picea abies (Norway spruce) (Picea excelsa). 0.0
Sma3: Phytochrome C 3.739e-24
Internal
sp_v3.0_unigene126868 SustainPine v3.0 483
AutoFact: Ubiquitin carrier protein n=1 Tax=Yarrowia lipolytica CLIB122 RepID=Q6C907_YARLI 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Ubiquitin carrier protein 0.0
Complete
sp_v3.0_unigene126875 SustainPine v3.0 252
AutoFact: Nucleoside diphosphate kinase n=2 Tax=Picea sitchensis RepID=A9NPA6_PICSI 8.0e-18
FL-Next: sp=Nucleoside diphosphate kinase; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Nucleoside diphosphate kinase 0.0
C-terminus
sp_v3.0_unigene129304 SustainPine v3.0 364
AutoFact: deetiolated 1-like protein [Solanum tuberosum] 3.0e-35
FL-Next: sp=Light-mediated development protein DET1; Solanum lycopersicum (Tomato) (Lycopersicon esculentum). 0.0
Sma3: Light-mediated development protein DET1 3.033e-14
C-terminus
sp_v3.0_unigene131112 SustainPine v3.0 319
AutoFact: COP9 signalosome complex subunit 2 n=3 Tax=Brassicaceae RepID=CSN2_ARATH 5.0e-17
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: COP9 signalosome complex subunit 2 2.893e-13
N-terminus
sp_v3.0_unigene131627 SustainPine v3.0 347
AutoFact: COP9 signalosome complex subunit 8 [Arabidopsis thaliana] sp|P43255.1|CSN8_ARATH RecName: Full=COP9 signalosome complex subunit 8; Short=CSN complex subunit 8; AltName: Full=Constitutive photomorphogenesis protein 9; AltName: Full=Protein FUSCA 7 gb|AAL58 6.0e-23
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
N-terminus
sp_v3.0_unigene131944 SustainPine v3.0 161
AutoFact: Nucleoside diphosphate kinase (Fragment) n=4 Tax=Populus trichocarpa RepID=B9GP74_POPTR 2.0e-06
FL-Next: sp=Nucleoside diphosphate kinase; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Nucleoside diphosphate kinase 2.154e-25
Putative N-terminus
sp_v3.0_unigene133453 SustainPine v3.0 491
AutoFact: PCI domain containing protein 2.0e-12
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: COP9 signalosome complex subunit 4 3.541e-09
C-terminus
sp_v3.0_unigene137157 SustainPine v3.0 278
AutoFact: Light-mediated development protein DET1 [Arabidopsis thaliana] sp|P48732.2|DET1_ARATH RecName: Full=Light-mediated development protein DET1; AltName: Full=Protein DEETIOLATED 1 gb|AAU05471.1| At4g10180 [Arabidopsis thaliana] gb|AAW30032.1| At4g10180 [Arab 2.0e-16
FL-Next: sp=Light-mediated development protein DET1; Solanum lycopersicum (Tomato) (Lycopersicon esculentum). 0.0
Sma3: Light-mediated development protein DET1 1.535e-14
Internal
sp_v3.0_unigene137422 SustainPine v3.0 204
AutoFact: ubiquitin ligase protein cop1, putative (EC:1.3.1.74) 2.0e-14
FL-Next: sp=Protein SPA1-RELATED 4; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Ubiquitin ligase protein cop1, putative 3.622e-08
Internal
sp_v3.0_unigene140323 SustainPine v3.0 381
AutoFact: UV-damaged DNA binding factor - like protein [Arabidopsis thaliana] 1.0e-14
FL-Next: sp=DNA damage-binding protein 1a; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain