Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: red or far-red light signaling pathway

Term: GO:0010017  Help

Source: GO from Sma3

Ontology: Biological Process

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v3.0_unigene34729 SustainPine v3.0 661
• AutoFact: ubiquitin ligase protein cop1, putative (EC:1.3.1.74); K10143 E3 ubiquitin-protein ligase RFWD2 [EC:6.3.2.19] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Ubiquitin ligase protein cop1, putative 9.041e-14
C-terminus
sp_v3.0_unigene35004 SustainPine v3.0 913
• AutoFact: Protein GIGANTEA, putative n=1 Tax=Ricinus communis RepID=B9SEC2_RICCO 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Gigantea 1.055e-16
C-terminus
sp_v3.0_unigene35912 SustainPine v3.0 486
• AutoFact: Nucleoside diphosphate kinase n=9 Tax=Geobacillus RepID=NDK_GEOKA 0.0
• FL-Next: sp=Nucleoside diphosphate kinase; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Nucleoside diphosphate kinase 0.0
C-terminus
sp_v3.0_unigene40699 SustainPine v3.0 636
• AutoFact: Response regulator 1 n=1 Tax=Pinus pinea RepID=C0LLL0_PINPI 2.0e-34
• FL-Next: tr=Response regulator 1; Pinus pinea (Italian stone pine). 0.0
• Sma3: Type-a response regulator 1.173e-38
Putative C-terminus
sp_v3.0_unigene44186 SustainPine v3.0 753
• AutoFact: Unassigned protein
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Ubiquitin ligase protein cop1, putative 8.985e-15
N-terminus
sp_v3.0_unigene44631 SustainPine v3.0 277
• AutoFact: Phytochrome (Fragment) n=1 Tax=Pseudotsuga menziesii RepID=Q40917_PSEMZ 1.0e-34
• FL-Next: sp=Phytochrome; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Phytochrome A 1.716e-20
Internal
sp_v3.0_unigene45708 SustainPine v3.0 148
• AutoFact: Unassigned protein
• FL-Next: sp=Protein SUPPRESSOR OF PHYA-105 1; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: Ubiquitin ligase protein cop1, putative 1.987e-11
Internal
sp_v3.0_unigene46116 SustainPine v3.0 529
• AutoFact: deetiolated 1-like protein [Solanum tuberosum] 8.40779e-45
• FL-Next: sp=Light-mediated development protein DET1; Solanum lycopersicum (Tomato) (Lycopersicon esculentum). 0.0
• Sma3: Light-mediated development protein DET1 2.893e-14
N-terminus
sp_v3.0_unigene51444 SustainPine v3.0 709
• AutoFact: Ubiquitin carrier protein n=4 Tax=Viridiplantae RepID=C5X897_SORBI 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Ubiquitin carrier protein 0.0
Complete
sp_v3.0_unigene51523 SustainPine v3.0 417
• AutoFact: COP9 signalosome complex subunit 7 [Arabidopsis thaliana] sp|Q94JU3.1|CSN7_ARATH RecName: Full=COP9 signalosome complex subunit 7; Short=CSN complex subunit 7; AltName: Full=Protein FUSCA 5 gb|AAK50074.1|AF372934_1 At1g02090/T7I23_24 [Arabidopsis thaliana 3.0e-24
• FL-Next: Isoform 2 of COP9 signalosome complex subunit 7 OS=Arabidopsis thaliana GN=CSN7 0.0
• Sma3: COP9 signalosome complex subunit 7 1.588e-13
Putative C-terminus
sp_v3.0_unigene53782 SustainPine v3.0 490
• AutoFact: deetiolated 1-like protein [Solanum tuberosum] 5.60519e-45
• FL-Next: sp=Light-mediated development protein DET1; Solanum lycopersicum (Tomato) (Lycopersicon esculentum). 0.0
• Sma3: Light-mediated development protein DET1 3.178e-14
Internal
sp_v3.0_unigene54253 SustainPine v3.0 463
• AutoFact: DNA damage-binding protein 1 n=5 Tax=core eudicotyledons RepID=DDB1_SOLCE 0.0
• FL-Next: sp=DNA damage-binding protein 1; cheesmanii). 0.0
Internal
sp_v3.0_unigene55741 SustainPine v3.0 197
• AutoFact: [KAD] COG5147 Myb superfamily proteins, including transcription factors and mRNA splicing factors 1.0e-06
• FL-Next: tr=MYB-like protein; Taxus globosa. 0.0
• Sma3: MYB transcription factor 1.86e-15
Internal
sp_v3.0_unigene57566 SustainPine v3.0 260
• AutoFact: photoregulatory zinc-finger protein COP1 [Rosa hybrid cultivar] 9.0e-24
• FL-Next: sp=E3 ubiquitin-protein ligase COP1; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: COP1 6.811e-11
Internal
sp_v3.0_unigene58874 SustainPine v3.0 256
• AutoFact: Nucleoside diphosphate kinase n=3 Tax=Andropogoneae RepID=C5YPK6_SORBI 3.0e-36
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Nucleoside diphosphate kinase 0.0
Internal
sp_v3.0_unigene60466 SustainPine v3.0 260
• AutoFact: MYB domain class transcription factor n=1 Tax=Malus x domestica RepID=D9ZJ65_MALDO 2.0e-25
• FL-Next: tr=R2R3-MYB transcription factor MYB4; Picea glauca (White spruce) (Pinus glauca). 0.0
• Sma3: MYB transcription factor 3.336e-19
Internal
sp_v3.0_unigene63843 SustainPine v3.0 307
• AutoFact: Putative COP9 complex subunit 6 protein (Fragment) n=1 Tax=Brachypodium sylvaticum RepID=Q2L396_BRASY 7.0e-18
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: COP9 signalosome complex subunit 6a 8.128e-14
Putative N-terminus
sp_v3.0_unigene64375 SustainPine v3.0 275
• AutoFact: Nucleoside diphosphate kinase (Fragment) n=2 Tax=Glycine max RepID=C6T1V4_SOYBN 4.2039e-45
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Nucleoside diphosphate kinase 0.0
Putative C-terminus
sp_v3.0_unigene65687 SustainPine v3.0 202
• AutoFact: Os02g0203000 protein n=2 Tax=Oryza sativa RepID=Q0E2Y8_ORYSJ 1.0e-12
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Transcription factor HY5 2.378e-14
Internal
sp_v3.0_unigene65894 SustainPine v3.0 171
• AutoFact: Unassigned protein
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Putative N-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain