Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: poly(U) RNA binding

Term: GO:0008266  Help

Source: GO from Sma3

Ontology: Molecular Function


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene68648 SustainPine v3.0 239
AutoFact: putative nucleic acid-binding protein [Oryza sativa Japonica Group] gb|EAZ43633.1| hypothetical protein OsJ_28256 [Oryza sativa Japonica Group] dbj|BAG92121.1| unnamed protein product [Oryza sativa Japonica Group] 3.0e-23
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Ribonucleoprotein 8.677e-15
Putative C-terminus
sp_v3.0_unigene68794 SustainPine v3.0 255
AutoFact: MRNA-binding protein (Fragment) n=1 Tax=Capsicum annuum RepID=A0MLW6_CAPAN 7.0e-21
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
C-terminus
sp_v3.0_unigene68845 SustainPine v3.0 253
AutoFact: Protein phosphatase 2a, regulatory subunit, putative n=1 Tax=Ricinus communis RepID=B9SH46_RICCO 4.0e-15
FL-Next: sp=Serine/threonine protein phosphatase 2A 59 kDa regulatory subunit B' gamma isoform; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Protein phosphatase 2a, regulatory subunit, putative 2.952e-12
Putative C-terminus
sp_v3.0_unigene70111 SustainPine v3.0 360
AutoFact: ferredoxin-NADP(H) oxidoreductase [Triticum aestivum] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Ferredoxin--NADP reductase 0.0
Internal
sp_v3.0_unigene70549 SustainPine v3.0 242
AutoFact: nucleic acid-binding protein-like [Oryza sativa Japonica Group] 2.0e-30
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Ribonucleoprotein 9.835e-14
Putative C-terminus
sp_v3.0_unigene70660 SustainPine v3.0 492
AutoFact: Serine hydroxymethyltransferase n=9 Tax=Poaceae RepID=Q7Y1F0_ORYSJ 0.0
FL-Next: sp=Serine hydroxymethyltransferase; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Serine hydroxymethyltransferase 0.0
C-terminus
sp_v3.0_unigene75296 SustainPine v3.0 270
AutoFact: Oxygen-evolving enhancer protein 2, chloroplastic n=1 Tax=Cucumis sativus RepID=PSBP_CUCSA 4.0e-18
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: OEE2 5.852e-39
Misassembled
sp_v3.0_unigene75637 SustainPine v3.0 187
AutoFact: Oxygen-evolving enhancer protein 1, chloroplastic n=1 Tax=Fritillaria agrestis RepID=PSBO_FRIAG 4.0e-08
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: OEE1 5.727e-31
Internal
sp_v3.0_unigene77452 SustainPine v3.0 317
AutoFact: Oxygen-evolving enhancer protein 1, chloroplastic n=1 Tax=Fritillaria agrestis RepID=PSBO_FRIAG 9.0e-18
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: OEE1 5.659e-34
Internal
sp_v3.0_unigene78804 SustainPine v3.0 495
AutoFact: Similar to tRNA-splicing endonuclease positive effector SEN1 [Arabidopsis thaliana] 5.0e-26
FL-Next: sp=Probable helicase MAGATAMA 3; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: F17F16.1 protein 6.823e-06
Internal
sp_v3.0_unigene79824 SustainPine v3.0 150
AutoFact: NAD dependent epimerase/dehydratase, putative 6.0e-12
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene81128 SustainPine v3.0 177
AutoFact: oxygen-evolving enhancer protein 1 [Oryza sativa Indica Group] 2.0e-11
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: OEC 33 kDa subunit 2.385e-33
Misassembled
sp_v3.0_unigene96188 SustainPine v3.0 578
AutoFact: Similar to tRNA-splicing endonuclease positive effector SEN1 [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: F17F16.1 protein 8.772e-06
Internal
sp_v3.0_unigene104939 SustainPine v3.0 242
AutoFact: tRNA-splicing endonuclease positive effector-related protein [Arabidopsis thaliana] emb|CAB43845.1| putative protein [Arabidopsis thaliana] emb|CAB81003.1| putative protein [Arabidopsis thaliana] gb|AEE85721.1| tRNA-splicing endonuclease positive effector 1.0e-29
FL-Next: sp=Probable helicase MAGATAMA 3; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Superfamily I helicase 2.304e-09
Internal
sp_v3.0_unigene110689 SustainPine v3.0 320
AutoFact: protein phosphatase 2A regulatory subunit B' eta [Arabidopsis thaliana] ref|NP_001030770.1| protein phosphatase 2A regulatory subunit B' eta [Arabidopsis thaliana] sp|Q9LU89.1|2A5N_ARATH RecName: Full=Serine/threonine protein phosphatase 2A 59 kDa regulat 1.0e-35
FL-Next: sp=Serine/threonine protein phosphatase 2A 59 kDa regulatory subunit B' eta isoform; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Protein phosphatase 2a, regulatory subunit, putative 1.004e-21
Internal
sp_v3.0_unigene113905 SustainPine v3.0 370
AutoFact: Similar to tRNA-splicing endonuclease positive effector SEN1 [Arabidopsis thaliana] 7.0e-11
FL-Next: tr=Putative uncharacterized protein; Oryza sativa subsp. japonica (Rice). 0.0
Sma3: F17F16.1 protein 6.823e-06
Internal
sp_v3.0_unigene126688 SustainPine v3.0 791
AutoFact: Nucleic acid-binding protein n=1 Tax=Zea mays RepID=Q41834_MAIZE 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Ribonucleoprotein 1.048e-16
C-terminus
sp_v3.0_unigene126851 SustainPine v3.0 977
AutoFact: nucleic acid binding protein1 [Zea mays] gb|AAA33486.1| nucleic acid-binding protein [Zea mays] gb|ACG38158.1| ribonucleoprotein [Zea mays] gb|ACL52389.1| unknown [Zea mays] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Ribonucleoprotein 3.69e-17
C-terminus
sp_v3.0_unigene137416 SustainPine v3.0 352
AutoFact: protein MAGATAMA 3 [Arabidopsis thaliana] gb|ACI63222.1| MAA3 [Arabidopsis thaliana] gb|AEE83627.1| protein MAGATAMA 3 [Arabidopsis thaliana] 4.0e-38
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Splicing endonuclease positive effector sen1, putative 2.258e-09
Internal
sp_v3.0_unigene140616 SustainPine v3.0 731
AutoFact: Serine hydroxymethyltransferase n=2 Tax=Picea sitchensis RepID=B8LLP6_PICSI 0.0
FL-Next: sp=Serine hydroxymethyltransferase; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Serine hydroxymethyltransferase 0.0
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain