Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: nucleoid

Term: GO:0009295  Help

Source: GO from Sma3

Ontology: Cellular Component


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene980 SustainPine v3.0 1101
AutoFact: Plastid RNA-binding protein n=1 Tax=Nicotiana benthamiana RepID=D6QX33_NICBE 0.0
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Sma3: Putative uncharacterized protein At3g48500 5.819e-10
N-terminus
sp_v3.0_unigene1950 SustainPine v3.0 2057
AutoFact: DNA polymerase n=2 Tax=Nicotiana tabacum RepID=Q3LHS9_TOBAC 0.0
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Sma3: Putative PolI-like DNA polymerase 2.668e-08
C-terminus
sp_v3.0_unigene3273 SustainPine v3.0 2627
AutoFact: DNA gyrase subunit A, chloroplastic/mitochondrial n=1 Tax=Nicotiana benthamiana RepID=GYRA_NICBE 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Probable DNA gyrase subunit A, chloroplastic/mitochondrial 5.669e-09
Complete
sp_v3.0_unigene5470 SustainPine v3.0 1564
AutoFact: Fructokinase-like protein 1 n=1 Tax=Solanum tuberosum RepID=D9IWP2_SOLTU 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Putative fructokinase 2.843e-08
Putative C-terminus
sp_v3.0_unigene7654 SustainPine v3.0 1499
AutoFact: Superoxide dismutase n=1 Tax=Ginkgo biloba RepID=B8YNX9_GINBI 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Superoxide dismutase 0.0
Complete
sp_v3.0_unigene10333 SustainPine v3.0 1084
AutoFact: UDP-n-acetylmuramoylalanyl-d-glutamate--2, 6-diaminopimelate ligase, putative n=1 Tax=Ricinus communis RepID=B9RCC8_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Internal
sp_v3.0_unigene14542 SustainPine v3.0 743
AutoFact: DNA polymerase A family protein, putative n=3 Tax=Arabidopsis thaliana RepID=Q9C6J5_ARATH 0.0
FL-Next: tr=At1g50840/F8A12_8; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: PolI-like DNA polymerase 2.505e-08
Internal
sp_v3.0_unigene17976 SustainPine v3.0 1361
AutoFact: Elongation factor Tu n=3 Tax=Spermatophyta RepID=A9NWL9_PICSI 0.0
FL-Next: sp=Elongation factor Tu; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Elongation factor Tu 0.0
C-terminus
sp_v3.0_unigene20361 SustainPine v3.0 1039
AutoFact: putative thioredoxin [Solanum lycopersicum] 2.0e-26
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Putative thioredoxin 7.102e-07
Complete
sp_v3.0_unigene20934 SustainPine v3.0 520
AutoFact: Thioredoxin (Fragment) n=1 Tax=Physcomitrella patens subsp. patens RepID=A9ST39_PHYPA 1.0e-13
FL-Next: sp=Thioredoxin-like protein CITRX, chloroplastic; Oryza sativa subsp. japonica (Rice). 0.0
Sma3: Putative thioredoxin 3.859e-07
Putative Complete
sp_v3.0_unigene24676 SustainPine v3.0 668
AutoFact: Superoxide dismutase n=1 Tax=Ectocarpus siliculosus RepID=D8LI17_ECTSI 0.0
FL-Next: sp=Superoxide dismutase; Pinus pinaster (Maritime pine). 0.0
Sma3: Superoxide dismutase 0.0
C-terminus
sp_v3.0_unigene32922 SustainPine v3.0 1122
AutoFact: 50S ribosomal protein L12, chloroplastic n=2 Tax=Spinacia oleracea RepID=RK12_SPIOL 3.0e-21
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: 50S ribosomal protein L12, chloroplastic 0.0
Complete
sp_v3.0_unigene35718 SustainPine v3.0 685
AutoFact: Elongation factor Tu n=4 Tax=Oryza sativa RepID=Q6ZI53_ORYSJ 0.0
FL-Next: sp=Elongation factor Tu; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Elongation factor Tu 0.0
C-terminus
sp_v3.0_unigene43091 SustainPine v3.0 225
AutoFact: DNA polymerase n=2 Tax=Nicotiana tabacum RepID=Q3LHS9_TOBAC 1.0e-24
FL-Next: tr=DNA polymerase; Nicotiana tabacum (Common tobacco). 0.0
Sma3: Putative PolI-like DNA polymerase 1.195e-08
Internal
sp_v3.0_unigene43284 SustainPine v3.0 189
AutoFact: DNA polymerase A family protein, putative n=3 Tax=Arabidopsis thaliana RepID=Q9C6J5_ARATH 1.0e-16
FL-Next: tr=DNA polymerase A family protein, putative; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Putative PolI-like DNA polymerase 1.745e-08
Internal
sp_v3.0_unigene45816 SustainPine v3.0 443
AutoFact: PREDICTED: similar to DNA gyrase subunit A, chloroplastic/mitochondrial n=1 Tax=Vitis vinifera RepID=UPI0001985B62 0.0
FL-Next: sp=Probable DNA gyrase subunit A, chloroplastic/mitochondrial; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Probable DNA gyrase subunit A, chloroplastic/mitochondrial 7.399e-09
Internal
sp_v3.0_unigene47861 SustainPine v3.0 1225
AutoFact: Fructokinase-like protein 1 n=1 Tax=Solanum tuberosum RepID=D9IWP2_SOLTU 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Putative fructokinase 2.549e-08
C-terminus
sp_v3.0_unigene53716 SustainPine v3.0 380
AutoFact: MurE synthetase n=1 Tax=Physcomitrella patens subsp. patens RepID=Q3LHI5_PHYPA 3.0e-33
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Internal
sp_v3.0_unigene57192 SustainPine v3.0 272
AutoFact: DNA gyrase subunit A, chloroplastic/mitochondrial n=1 Tax=Nicotiana benthamiana RepID=GYRA_NICBE 2.0e-16
FL-Next: sp=DNA gyrase subunit A, chloroplastic/mitochondrial; Nicotiana benthamiana. 0.0
Sma3: Probable DNA gyrase subunit A, chloroplastic/mitochondrial 3.06e-09
Internal
sp_v3.0_unigene66515 SustainPine v3.0 305
AutoFact: Thioredoxin (Fragment) n=1 Tax=Physcomitrella patens subsp. patens RepID=A9ST39_PHYPA 1.0e-13
FL-Next: sp=Thioredoxin-like protein CITRX, chloroplastic; Oryza sativa subsp. japonica (Rice). 0.0
Sma3: Putative thioredoxin 3.859e-07
Putative C-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain