Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: nuclear speck

Term: GO:0016607  Help

Source: GO from Sma3

Ontology: Cellular Component


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene57052 SustainPine v3.0 279
AutoFact: Phytochrome P (Fragment) n=3 Tax=Strobus RepID=B8XQ15_PINPE 1.0e-23
FL-Next: sp=Phytochrome; Pinus sylvestris (Scots pine). 0.0
Sma3: Phytochrome D 6.791e-35
Internal
sp_v3.0_unigene59176 SustainPine v3.0 431
AutoFact: Arginine/serine-rich splicing factor RSP41, putative [Solanum demissum] 8.0e-09
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
N-terminus
sp_v3.0_unigene60466 SustainPine v3.0 260
AutoFact: MYB domain class transcription factor n=1 Tax=Malus x domestica RepID=D9ZJ65_MALDO 2.0e-25
FL-Next: tr=R2R3-MYB transcription factor MYB4; Picea glauca (White spruce) (Pinus glauca). 0.0
Sma3: MYB transcription factor 3.336e-19
Internal
sp_v3.0_unigene60528 SustainPine v3.0 326
AutoFact: splicing factor-like protein [Vitis riparia] 5.0e-20
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Arginine/serine-rich splicing factor RSP41 5.335e-08
N-terminus
sp_v3.0_unigene61826 SustainPine v3.0 208
AutoFact: Phytochrome N (Fragment) n=12 Tax=Pinaceae RepID=Q9FSD5_PINSY 9.0e-31
FL-Next: sp=Phytochrome; Picea abies (Norway spruce) (Picea excelsa). 0.0
Sma3: Phytochrome A 8.40779e-44
Internal
sp_v3.0_unigene67235 SustainPine v3.0 247
AutoFact: Elongation factor 2 (Fragment) n=1 Tax=Nicotiana tabacum RepID=Q9FEL2_TOBAC 2.0e-35
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Elongation factor 2 1.219e-40
Internal
sp_v3.0_unigene71803 SustainPine v3.0 342
AutoFact: Phytochrome n=1 Tax=Cuscuta pentagona RepID=Q6V7X3_CUSPE 5.0e-11
FL-Next: sp=Phytochrome; Picea abies (Norway spruce) (Picea excelsa). 0.0
Sma3: Phytochrome A 1.573e-08
Internal
sp_v3.0_unigene74074 SustainPine v3.0 348
AutoFact: Arginine/serine-rich splicing factor, putative n=1 Tax=Ricinus communis RepID=B9SAR0_RICCO 1.0e-22
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Arginine/serine-rich splicing factor, putative 9.398e-14
Internal
sp_v3.0_unigene74565 SustainPine v3.0 283
AutoFact: 116 kda u5 small nuclear ribonucleoprotein component [Cryptococcus neoformans var. neoformans JEC21] ref|XP_775690.1| hypothetical protein CNBD4190 [Cryptococcus neoformans var. neoformans B-3501A] gb|EAL21043.1| hypothetical protein CNBD4190 [Cryptococcu 1.99965e-42
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Elongation factor tu gtp-binding domain protein 2 1.197e-08
Internal
sp_v3.0_unigene79589 SustainPine v3.0 283
AutoFact: Phytochrome (Fragment) n=1 Tax=Pseudotsuga menziesii RepID=Q40917_PSEMZ 8.0e-33
FL-Next: sp=Phytochrome; Picea abies (Norway spruce) (Picea excelsa). 0.0
Sma3: Phytochrome A 7.793e-21
Internal
sp_v3.0_unigene79821 SustainPine v3.0 229
AutoFact: Arginine/serine-rich splicing factor, putative n=1 Tax=Ricinus communis RepID=B9SAR0_RICCO 3.0e-18
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Arginine/serine-rich splicing factor, putative 9.272e-14
Internal
sp_v3.0_unigene93929 SustainPine v3.0 768
AutoFact: Os03g0374575 protein n=4 Tax=Oryza sativa RepID=C7J0R1_ORYSJ 5.0e-12
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Serine/arginine rich splicing factor, putative 4.89e-08
N-terminus
sp_v3.0_unigene99474 SustainPine v3.0 949
AutoFact: Phytochrome n=12 Tax=Pinaceae RepID=PHY_PICAB 0.0
FL-Next: sp=Phytochrome; Picea abies (Norway spruce) (Picea excelsa). 0.0
Sma3: Phytochrome A 1.189e-17
Putative C-terminus
sp_v3.0_unigene99569 SustainPine v3.0 1007
AutoFact: E3 SUMO-protein ligase SIZ1 [Arabidopsis thaliana] ref|NP_001119465.1| E3 SUMO-protein ligase SIZ1 [Arabidopsis thaliana] gb|AED97324.1| E3 SUMO-protein ligase SIZ1 [Arabidopsis thaliana] gb|AED97328.1| E3 SUMO-protein ligase SIZ1 [Arabidopsis thaliana] 0.0
FL-Next: Isoform 2 of E3 SUMO-protein ligase SIZ1 OS=Arabidopsis thaliana GN=SIZ1 0.0
Internal
sp_v3.0_unigene101258 SustainPine v3.0 557
AutoFact: Phytochrome N (Fragment) n=12 Tax=Pinaceae RepID=Q9FSD5_PINSY 0.0
FL-Next: sp=Phytochrome; Picea abies (Norway spruce) (Picea excelsa). 0.0
Sma3: Phytochrome 2.305e-15
Internal
sp_v3.0_unigene106028 SustainPine v3.0 271
AutoFact: COP1 like protein [Arabidopsis thaliana] 2.0e-21
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Ubiquitin ligase protein cop1, putative 8.033e-11
Putative N-terminus
sp_v3.0_unigene106556 SustainPine v3.0 427
AutoFact: SPA1-related 4 protein [Arabidopsis thaliana] ref|NP_849802.1| SPA1-related 4 protein [Arabidopsis thaliana] sp|Q94BM7.1|SPA4_ARATH RecName: Full=Protein SPA1-RELATED 4 gb|AAK64180.1| putative phytochrome A supressor spa1 protein [Arabidopsis thaliana] gb 4.2039e-45
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Ubiquitin ligase protein cop1, putative 7.641e-14
Putative N-terminus
sp_v3.0_unigene107322 SustainPine v3.0 365
AutoFact: Phytochrome N (Fragment) n=12 Tax=Pinaceae RepID=Q9FSD5_PINSY 0.0
FL-Next: sp=Phytochrome; Picea abies (Norway spruce) (Picea excelsa). 0.0
Sma3: Phytochrome A 1.626e-19
Internal
sp_v3.0_unigene114534 SustainPine v3.0 342
AutoFact: R2R3-MYB transcription factor n=1 Tax=Pinus taeda RepID=Q6V0J3_PINTA 6.0e-20
FL-Next: tr=R2R3-MYB transcription factor; Pinus taeda (Loblolly pine). 0.0
Sma3: Myb-related protein Hv33 1.353e-13
N-terminus
sp_v3.0_unigene117765 SustainPine v3.0 189
AutoFact: Phytochrome n=12 Tax=Pinaceae RepID=PHY_PICAB 1.0e-27
FL-Next: sp=Phytochrome; Picea abies (Norway spruce) (Picea excelsa). 0.0
Sma3: Phytochrome A 0.0
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain