Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: nuclear speck

Term: GO:0016607  Help

Source: GO from Sma3

Ontology: Cellular Component

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v3.0_unigene15793 SustainPine v3.0 2010
• AutoFact: alternative splicing regulator [Triticum aestivum] 2.0e-39
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Complete
sp_v3.0_unigene16830 SustainPine v3.0 896
• AutoFact: putative E3 ubiquitin-protein ligase BAH1-like protein [Arabidopsis thaliana] sp|Q8GW10.1|BAH1L_ARATH RecName: Full=Probable E3 ubiquitin-protein ligase BAH1-like; AltName: Full=RING finger protein 178 dbj|BAC43727.1| unknown protein [Arabidopsis thaliana 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Putative uncharacterized protein At2g38920 1.443e-08
Putative C-terminus
sp_v3.0_unigene17267 SustainPine v3.0 2004
• AutoFact: Splicing factor-like protein n=3 Tax=Vitis RepID=Q6R4Q7_VITRI 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Arginine/serine-rich splicing factor RSP41 1.825e-16
Complete
sp_v3.0_unigene17842 SustainPine v3.0 1434
• AutoFact: Splicing factor-like protein n=3 Tax=Vitis RepID=Q6R4Q7_VITRI 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Arginine/serine-rich splicing factor RSP41 1.795e-16
Complete
sp_v3.0_unigene18726 SustainPine v3.0 1007
• AutoFact: Tymo_45kd_70kd multi-domain protein 1.0e-10
• Sma3: Putative arginine/serine-rich protein 3.506e-09
coding
sp_v3.0_unigene19339 SustainPine v3.0 1904
• AutoFact: protein serine/arginine-rich 22 [Arabidopsis thaliana] ref|NP_001078474.1| protein serine/arginine-rich 22 [Arabidopsis thaliana] emb|CAA19765.1| RSZp22 splicing factor [Arabidopsis thaliana] gb|AAD12769.1| 9G8-like SR protein [Arabidopsis thaliana] emb|C 4.0e-27
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Splicing factor, arginine/serine-rich 7 8.677e-15
Complete
sp_v3.0_unigene20223 SustainPine v3.0 950
• AutoFact: arginine/serine-rich-splicing factor RSP31 [Arabidopsis thaliana] sp|P92964.2|RSP31_ARATH RecName: Full=Arginine/serine-rich-splicing factor RSP31 gb|AAL27502.1|AF439831_1 AT3g61860/F21F14_30 [Arabidopsis thaliana] gb|AAM78075.1| AT3g61860/F21F14_30 [Arab 0.0
• FL-Next: sp=Arginine/serine-rich-splicing factor RSP31; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: Arginine/serine-rich splicing factor RSP41 2.678e-16
Complete
sp_v3.0_unigene20226 SustainPine v3.0 408
• AutoFact: Arginine/serine-rich splicing factor RSP41, putative [Solanum demissum] 2.0e-27
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Arginine/serine-rich splicing factor RSP41 1.565e-16
N-terminus
sp_v3.0_unigene20742 SustainPine v3.0 1198
• AutoFact: splicing factor [Oryza sativa Indica Group] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
N-terminus
sp_v3.0_unigene22900 SustainPine v3.0 850
• AutoFact: FKBP12-interacting protein of 37 kDa n=2 Tax=Arabidopsis RepID=FIP37_ARATH 2.0e-15
• FL-Next: sp=FKBP12-interacting protein of 37 kDa; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: Immunophilin-interacting protein AtFIP37 7.31e-06
N-terminus
sp_v3.0_unigene23221 SustainPine v3.0 311
• AutoFact: splicing factor-like protein [Vitis riparia] 1.0e-10
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Arginine/serine-rich splicing factor RSP41 4.694e-08
N-terminus
sp_v3.0_unigene23347 SustainPine v3.0 1680
• AutoFact: putative E3 ubiquitin-protein ligase BAH1-like protein [Arabidopsis thaliana] sp|Q8GW10.1|BAH1L_ARATH RecName: Full=Probable E3 ubiquitin-protein ligase BAH1-like; AltName: Full=RING finger protein 178 dbj|BAC43727.1| unknown protein [Arabidopsis thaliana 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Ubiquitin-protein ligase, putative 3.096e-07
Complete
sp_v3.0_unigene23818 SustainPine v3.0 1351
• AutoFact: putative FKBP12 interacting protein [Oryza sativa Japonica Group] 2.0e-37
• FL-Next: sp=FKBP12-interacting protein of 37 kDa; Arabidopsis thaliana (Mouse-ear cress). 0.0
C-terminus
sp_v3.0_unigene24422 SustainPine v3.0 1490
• AutoFact: Os03g0374575 protein n=4 Tax=Oryza sativa RepID=C7J0R1_ORYSJ 4.0e-39
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Serine/arginine rich splicing factor, putative 1.058e-15
Complete
sp_v3.0_unigene24482 SustainPine v3.0 541
• AutoFact: putative arginine/serine-rich splicing factor [Medicago sativa subsp. x varia] 1.4013e-45
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Splicing factor, arginine/serine-rich 2 5.614e-16
N-terminus
sp_v3.0_unigene24667 SustainPine v3.0 497
• AutoFact: Protein mago nashi n=7 Tax=Magnoliophyta RepID=B6ST87_MAIZE 0.0
• FL-Next: tr=Mago nashi; Taiwania cryptomerioides. 0.0
• Sma3: Mago nashi-like protein 8.093e-21
Complete
sp_v3.0_unigene24803 SustainPine v3.0 632
• AutoFact: Elongation factor, putative n=2 Tax=Arachnida RepID=B7QMV1_IXOSC 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Elongation factor 2 7.93135e-43
C-terminus
sp_v3.0_unigene26378 SustainPine v3.0 501
• AutoFact: Elongation factor 2 n=5 Tax=Caenorhabditis RepID=EF2_CAEEL 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Elongation factor 2 6.10966e-43
C-terminus
sp_v3.0_unigene26581 SustainPine v3.0 555
• AutoFact: Elongation factor, putative n=2 Tax=Arachnida RepID=B7QMV1_IXOSC 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Elongation factor 2 5.94151e-43
Internal
sp_v3.0_unigene27374 SustainPine v3.0 424
• AutoFact: Elongation factor 2 n=5 Tax=Caenorhabditis RepID=EF2_CAEEL 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Elongation factor 2 9.13647e-43
C-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain