Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: double-strand break repair via homologous recombination

Term: GO:0000724  Help

Source: GO from Sma3

Ontology: Biological Process

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v3.0_unigene667 SustainPine v3.0 2713
• AutoFact: DNA repair and recombination protein RAD54B, putative n=1 Tax=Ricinus communis RepID=B9RYJ2_RICCO 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: SNF2 super family 6.56e-12
Complete
sp_v3.0_unigene4718 SustainPine v3.0 389
• AutoFact: ATP-dependent DNA helicase Q-like 2 [Arabidopsis thaliana] sp|Q9FT73.1|RQL2_ARATH RecName: Full=ATP-dependent DNA helicase Q-like 2; AltName: Full=RecQ-like protein 2; Short=AtRecQ2; Short=AtRecQl2 emb|CAC14866.1| DNA Helicase [Arabidopsis thaliana] gb|AE 2.0e-39
• FL-Next: sp=Mediator of RNA polymerase II transcription subunit 34; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: ATP-dependent DNA helicase, RecQ family protein, expressed 5.767e-11
Internal
sp_v3.0_unigene5756 SustainPine v3.0 2592
• AutoFact: transducin/WD40 domain-containing protein [Arabidopsis thaliana] dbj|BAA77766.1| FAS2 [Arabidopsis thaliana] dbj|BAB11430.1| FAS2 [Arabidopsis thaliana] gb|AED97930.1| transducin/WD40 domain-containing protein [Arabidopsis thaliana] 0.0
• FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
• Sma3: FAS2 3.801e-09
Complete
sp_v3.0_unigene8045 SustainPine v3.0 1694
• AutoFact: Excision repair cross-complementing 1 ercc1, putative n=1 Tax=Ricinus communis RepID=B9RF25_RICCO 0.0
• FL-Next: sp=DNA excision repair protein ERCC-1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Complete
sp_v3.0_unigene12608 SustainPine v3.0 795
• AutoFact: ATP-dependent DNA helicase Q-like 3 n=2 Tax=Arabidopsis thaliana RepID=RQL3_ARATH 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: ATP-dependent DNA helicase, RecQ family protein, expressed 3.136e-14
Internal
sp_v3.0_unigene16476 SustainPine v3.0 1096
• AutoFact: pfam12253, CAF1A, Chromatin assembly factor 1 subunit A 7.0e-25
• FL-Next: tr=Putative uncharacterized protein; Medicago truncatula (Barrel medic) (Medicago tribuloides). 0.0
Internal
sp_v3.0_unigene40266 SustainPine v3.0 400
• AutoFact: RecA bacterial DNA recombination protein [Medicago truncatula] 3.0e-36
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: DNA repair protein radA (RadA)-like 2.399e-09
Internal
sp_v3.0_unigene40706 SustainPine v3.0 979
• AutoFact: PREDICTED: similar to Os07g0681600 n=1 Tax=Vitis vinifera RepID=UPI00019834DE 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: DNA Helicase 5.744e-14
Internal
sp_v3.0_unigene44382 SustainPine v3.0 1524
• AutoFact: putative DNA helicase [Arabidopsis thaliana] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: DNA Helicase 4.028e-21
C-terminus
sp_v3.0_unigene47929 SustainPine v3.0 1180
• AutoFact: Chromatin assembly factor 1, subunit A, putative n=1 Tax=Ricinus communis RepID=B9RM13_RICCO 2.0e-38
• FL-Next: tr=Putative uncharacterized protein; Arabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress). 0.0
Putative N-terminus
sp_v3.0_unigene61181 SustainPine v3.0 105
• AutoFact: DNA repair protein RAD54-like [Arabidopsis thaliana] 4.0e-08
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: SNF2 super family 4.052e-06
Internal
sp_v3.0_unigene63058 SustainPine v3.0 139
• AutoFact: DNA repair protein RAD54-like [Arabidopsis thaliana] 3.0e-15
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
N-terminus
sp_v3.0_unigene67374 SustainPine v3.0 237
• AutoFact: DNA repair protein radA (radA)-like [Oryza sativa Japonica Group] dbj|BAD45123.1| DNA repair protein radA (radA)-like [Oryza sativa Japonica Group] dbj|BAG91035.1| unnamed protein product [Oryza sativa Japonica Group] 1.0e-14
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: RAD51C protein 3.006e-09
Internal
sp_v3.0_unigene70764 SustainPine v3.0 251
• AutoFact: DNA repair and recombination protein radA, putative n=1 Tax=Ricinus communis RepID=B9RDA0_RICCO 4.0e-17
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
C-terminus
sp_v3.0_unigene75119 SustainPine v3.0 142
• AutoFact: Putative DNA repair protein rhp54 n=1 Tax=Oryza sativa Japonica Group RepID=Q6Z6G1_ORYSJ 2.0e-11
• FL-Next: sp=DNA repair and recombination protein RAD54; Oryza sativa subsp. japonica (Rice). 0.0
Internal
sp_v3.0_unigene76619 SustainPine v3.0 321
• AutoFact: RAD26-like SNF2 family DNA-dependent ATPase n=1 Tax=Laccaria bicolor S238N-H82 RepID=B0D7Q2_LACBS 1.0e-24
• FL-Next: tr=GAGA-binding transcriptional activator; Pinus taeda (Loblolly pine). 0.0
• Sma3: SNF2 super family 3.206e-32
Putative C-terminus
sp_v3.0_unigene94218 SustainPine v3.0 314
• AutoFact: RecQ-like helicase 2 [Oryza sativa Japonica Group] 9.80909e-45
• FL-Next: Isoform 2 of Mediator of RNA polymerase II transcription subunit 34 OS=Arabidopsis thaliana GN=MED34 0.0
• Sma3: DNA Helicase 1.082e-17
Internal
sp_v3.0_unigene94432 SustainPine v3.0 566
• AutoFact: Unassigned protein
• FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Internal
sp_v3.0_unigene96401 SustainPine v3.0 695
• AutoFact: ATP-dependent DNA helicase Q-like 2 [Arabidopsis thaliana] sp|Q9FT73.1|RQL2_ARATH RecName: Full=ATP-dependent DNA helicase Q-like 2; AltName: Full=RecQ-like protein 2; Short=AtRecQ2; Short=AtRecQl2 emb|CAC14866.1| DNA Helicase [Arabidopsis thaliana] gb|AE 2.94273e-44
• FL-Next: sp=Mediator of RNA polymerase II transcription subunit 34; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: ATP-dependent DNA helicase, RecQ family protein, expressed 5.047e-11
N-terminus
sp_v3.0_unigene98663 SustainPine v3.0 455
• AutoFact: DNA helicase hus2, putative n=1 Tax=Ricinus communis RepID=B9SXG0_RICCO 2.0e-22
• FL-Next: sp=ATP-dependent DNA helicase Q-like 4A; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain