Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: DNA-directed RNA polymerase, subunit 2, domain 6

Term: IPR007120  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene99374 SustainPine v3.0 440
AutoFact: DNA-directed RNA polymerase (Fragment) n=1 Tax=Ginkgo biloba RepID=Q1L6W2_GINBI 0.0
FL-Next: sp=DNA-directed RNA polymerase D subunit 2a; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: DNA-directed RNA polymerase 1.16e-06
Internal
sp_v3.0_unigene100218 SustainPine v3.0 317
AutoFact: DNA-directed RNA polymerase n=4 Tax=Solanaceae RepID=Q1L5Z1_SOLLC 0.0
FL-Next: sp=DNA-directed RNA polymerase II subunit RPB2; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: DNA-directed RNA polymerase 2.155e-28
Internal
sp_v3.0_unigene101651 SustainPine v3.0 479
AutoFact: DNA-directed RNA polymerase (Fragment) n=1 Tax=Ginkgo biloba RepID=Q1L6W2_GINBI 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: DNA-directed RNA polymerase 6.085e-25
C-terminus
sp_v3.0_unigene102446 SustainPine v3.0 315
AutoFact: transcription factor bHLH76 [Arabidopsis thaliana] gb|AAS79545.1| putative transcription factor [Arabidopsis thaliana] emb|CAG25856.1| hypothetical protein [Arabidopsis thaliana] gb|AEE30669.1| transcription factor bHLH76 [Arabidopsis thaliana] 4.0e-39
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: BHLH transcription factor 1.574e-19
Internal
sp_v3.0_unigene106933 SustainPine v3.0 382
AutoFact: bHLH transcription factor PTF1-like [Oryza sativa Japonica Group] 2.0e-14
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: BHLH transcription factor 1.252e-19
N-terminus
sp_v3.0_unigene107823 SustainPine v3.0 402
AutoFact: DNA-directed RNA polymerase (Fragment) n=1 Tax=Ginkgo biloba RepID=Q1L6W2_GINBI 0.0
FL-Next: Isoform 2 of DNA-directed RNA polymerase D subunit 2b OS=Arabidopsis thaliana GN=NRPD2b 0.0
Sma3: DNA-directed RNA polymerase 1.371e-20
Internal
sp_v3.0_unigene112810 SustainPine v3.0 331
AutoFact: DNA-directed RNA polymerase (Fragment) n=1 Tax=Solanum lycopersicum RepID=Q1L6V6_SOLLC 4.0e-27
FL-Next: Isoform 2 of DNA-directed RNA polymerase D subunit 2b OS=Arabidopsis thaliana GN=NRPD2b 0.0
Sma3: DNA-directed RNA polymerase 1.476e-08
Internal
sp_v3.0_unigene114970 SustainPine v3.0 626
AutoFact: DNA-directed RNA polymerase (Fragment) n=1 Tax=Ginkgo biloba RepID=Q1L6W2_GINBI 0.0
FL-Next: sp=DNA-directed RNA polymerase subunit beta; Keteleeria davidiana (David's keteleeria) (Pseudotsuga davidiana). Plastid; Chloroplast. 0.0
Sma3: DNA-directed RNA polymerase 0.0
Internal
sp_v3.0_unigene150852 SustainPine v3.0 419
AutoFact: DNA-directed RNA polymerase n=1 Tax=Ectocarpus siliculosus RepID=D7G075_ECTSI 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: DNA-directed RNA polymerase 8.757e-34
Complete
sp_v3.0_unigene151015 SustainPine v3.0 393
AutoFact: DNA-directed RNA polymerase n=1 Tax=Ectocarpus siliculosus RepID=D7G075_ECTSI 1.0e-38
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: DNA-directed RNA polymerase 1.699e-31
Complete
sp_v3.0_unigene153956 SustainPine v3.0 434
AutoFact: DNA-directed RNA polymerase subunit beta n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LJE1_HALO1 0.0
FL-Next: sp=DNA-directed RNA polymerase subunit beta; Cephalotaxus wilsoniana. Plastid; Chloroplast. 0.0
Sma3: DNA-directed RNA polymerase subunit beta 0.0
Internal
sp_v3.0_unigene154287 SustainPine v3.0 436
AutoFact: DNA-directed RNA polymerase n=1 Tax=Ectocarpus siliculosus RepID=D7G075_ECTSI 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: DNA-directed RNA polymerase 3.21e-32
Complete
sp_v3.0_unigene154754 SustainPine v3.0 436
AutoFact: PREDICTED: DNA-directed RNA polymerase III B-like n=1 Tax=Rattus norvegicus RepID=UPI0001CF3F5E 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: DNA-directed RNA polymerase 6.549e-30
N-terminus
sp_v3.0_unigene155384 SustainPine v3.0 247
AutoFact: DNA-directed RNA polymerase, beta subunit family protein [Tetrahymena thermophila] gb|EAR82894.1| DNA-directed RNA polymerase, beta subunit family protein [Tetrahymena thermophila SB210] 1.0e-24
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: DNA-directed RNA polymerase 7.765e-15
Putative N-terminus
sp_v3.0_unigene162758 SustainPine v3.0 341
AutoFact: DNA-directed RNA polymerase n=1 Tax=Physcomitrella patens subsp. patens RepID=A9T5Q2_PHYPA 3.0e-30
FL-Next: sp=DNA-directed RNA polymerase II subunit RPB2; Solanum lycopersicum (Tomato) (Lycopersicon esculentum). 0.0
Internal
sp_v3.0_unigene164940 SustainPine v3.0 375
AutoFact: bHLH transcription factor PTF1 [Zea mays] gb|ABF13333.1| bHLH transcription factor PTF1 [Zea mays] 1.0e-31
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: BHLH transcription factor 3.949e-20
Internal
sp_v3.0_unigene165202 SustainPine v3.0 160
AutoFact: DNA-directed RNA polymerase (Fragment) n=1 Tax=Ginkgo biloba RepID=Q1L6W2_GINBI 3.0e-18
FL-Next: sp=DNA-directed RNA polymerase II subunit RPB2; Solanum lycopersicum (Tomato) (Lycopersicon esculentum). 0.0
Sma3: DNA-directed RNA polymerase 7.894e-26
Internal
sp_v3.0_unigene192992 SustainPine v3.0 433
AutoFact: DNA-directed RNA polymerase subunit beta n=1 Tax=Conexibacter woesei DSM 14684 RepID=D3FET2_CONWI 0.0
FL-Next: sp=DNA-directed RNA polymerase subunit beta; Larix decidua (European larch). Plastid; Chloroplast. 0.0
Sma3: DNA-directed RNA polymerase subunit beta 0.0
Internal
sp_v3.0_unigene193150 SustainPine v3.0 607
AutoFact: DNA-directed RNA polymerase n=1 Tax=Trichoplax adhaerens RepID=B3S2W9_TRIAD 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: DNA-directed RNA polymerase 0.0
Putative Complete
sp_v3.0_unigene207719 SustainPine v3.0 724
AutoFact: DNA-directed RNA polymerase (Fragment) n=1 Tax=Vitis vinifera RepID=D7TX75_VITVI 4.0e-23
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Putative C-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain