Sustainpine_db
HomeAssembliesBLASTSearchInstitutions

Assembly Name: SustainPine v3.0

Name: DNA-directed RNA polymerase, subunit 2, domain 6

Term: IPR007120  Help

Source: InterPro from Sma3

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v3.0_unigene59824 SustainPine v3.0 97
• AutoFact: DNA-directed RNA polymerase (Fragment) n=1 Tax=Ginkgo biloba RepID=Q1L6W2_GINBI 1.0e-07
• FL-Next: Isoform 2 of DNA-directed RNA polymerase D subunit 2b OS=Arabidopsis thaliana GN=NRPD2b 0.0
Internal
sp_v3.0_unigene62258 SustainPine v3.0 237
• AutoFact: DNA-directed RNA polymerase n=2 Tax=Selaginella moellendorffii RepID=D8T979_SELML 2.0e-17
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: DNA-directed RNA polymerase 8.566e-06
C-terminus
sp_v3.0_unigene62553 SustainPine v3.0 183
• AutoFact: PREDICTED: DNA-directed RNA polymerase III subunit RPC2 n=1 Tax=Acyrthosiphon pisum RepID=UPI00017918AB 3.0e-23
• FL-Next: sp=DNA-directed RNA polymerase subunit beta; Pinus densiflora (Japanese red pine). Plastid; Chloroplast. 0.0
• Sma3: DNA-directed RNA polymerase 6.759e-31
Internal
sp_v3.0_unigene62960 SustainPine v3.0 228
• AutoFact: DNA-directed RNA polymerase D subunit 2a n=3 Tax=Arabidopsis RepID=RPD2A_ARATH 2.0e-13
• FL-Next: sp=DNA-directed RNA polymerase D subunit 2a; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: DNA-directed RNA polymerase 4.708e-12
Internal
sp_v3.0_unigene64084 SustainPine v3.0 118
• AutoFact: DNA-directed RNA polymerase n=1 Tax=Populus trichocarpa RepID=B9IL57_POPTR 7.0e-07
• FL-Next: sp=DNA-directed RNA polymerase D subunit 2a; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene64772 SustainPine v3.0 222
• AutoFact: DNA-directed RNA polymerase (Fragment) n=1 Tax=Populus trichocarpa RepID=B9GLY1_POPTR 3.0e-13
• FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Internal
sp_v3.0_unigene66252 SustainPine v3.0 370
• AutoFact: DNA-directed RNA polymerase n=1 Tax=Vitis vinifera RepID=A5AMN9_VITVI 4.0e-25
• FL-Next: sp=DNA-directed RNA polymerase subunit beta; Pinus densiflora (Japanese red pine). Plastid; Chloroplast. 0.0
• Sma3: DNA-directed RNA polymerase 2.997e-39
Internal
sp_v3.0_unigene69224 SustainPine v3.0 277
• AutoFact: DNA-directed RNA polymerase (Fragment) n=5 Tax=Spermatophyta RepID=A2RQN0_9SPER 2.0e-38
• FL-Next: sp=DNA-directed RNA polymerase II subunit RPB2; Solanum lycopersicum (Tomato) (Lycopersicon esculentum). 0.0
• Sma3: DNA-directed RNA polymerase 1.747e-40
Internal
sp_v3.0_unigene69322 SustainPine v3.0 333
• AutoFact: DNA-directed RNA polymerase (Fragment) n=1 Tax=Ginkgo biloba RepID=Q1L6W2_GINBI 1.0e-26
• FL-Next: Isoform 2 of DNA-directed RNA polymerase D subunit 2b OS=Arabidopsis thaliana GN=NRPD2b 0.0
• Sma3: DNA-directed RNA polymerase 7.418e-06
Internal
sp_v3.0_unigene73524 SustainPine v3.0 483
• AutoFact: putative bHLH transcription factor PTF1 [Oryza sativa Japonica Group] dbj|BAH01152.1| unnamed protein product [Oryza sativa Japonica Group] gb|EEE57212.1| hypothetical protein OsJ_07173 [Oryza sativa Japonica Group] 2.0e-35
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: BHLH transcription factor 7.548e-13
Internal
sp_v3.0_unigene74885 SustainPine v3.0 342
• AutoFact: DNA-directed RNA polymerase n=1 Tax=Physcomitrella patens subsp. patens RepID=A9RNX6_PHYPA 8.0e-17
• FL-Next: sp=DNA-directed RNA polymerase; Physcomitrella patens subsp. patens (Moss). 0.0
• Sma3: DNA-directed RNA polymerase 9.633e-11
N-terminus
sp_v3.0_unigene74892 SustainPine v3.0 311
• AutoFact: DNA-directed RNA polymerase (Fragment) n=1 Tax=Ginkgo biloba RepID=Q1L6W2_GINBI 8.0e-30
• FL-Next: Isoform 2 of DNA-directed RNA polymerase D subunit 2b OS=Arabidopsis thaliana GN=NRPD2b 0.0
Internal
sp_v3.0_unigene75117 SustainPine v3.0 293
• AutoFact: RNA polymerase II subunit RPB2 (Fragment) n=20 Tax=Polyporales RepID=Q873T6_9APHY 0.0
• FL-Next: sp=DNA-directed RNA polymerase II subunit RPB2; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: DNA-directed RNA polymerase 6.215e-30
Internal
sp_v3.0_unigene75439 SustainPine v3.0 176
• AutoFact: DNA-directed RNA polymerase (Fragment) n=1 Tax=Berberidopsis corallina RepID=Q1L5Z7_9MAGN 2.0e-17
• FL-Next: sp=DNA-directed RNA polymerase II subunit RPB2; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: DNA-directed RNA polymerase 1.545e-24
Internal
sp_v3.0_unigene76907 SustainPine v3.0 285
• AutoFact: RNA polymerase II second largest subunit (Fragment) n=1 Tax=Teucrium fruticans RepID=Q6Q254_9LAMI 3.0e-39
• FL-Next: sp=DNA-directed RNA polymerase II subunit RPB2; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: DNA-directed RNA polymerase 3.49501e-40
Internal
sp_v3.0_unigene78149 SustainPine v3.0 193
• AutoFact: DNA-directed RNA polymerase n=2 Tax=Selaginella moellendorffii RepID=D8T979_SELML 3.0e-22
• FL-Next: sp=DNA-directed RNA polymerase II subunit RPB2; Solanum lycopersicum (Tomato) (Lycopersicon esculentum). 0.0
• Sma3: DNA-directed RNA polymerase 1.324e-14
Internal
sp_v3.0_unigene80757 SustainPine v3.0 186
• AutoFact: DNA-directed RNA polymerase (Fragment) n=1 Tax=Ginkgo biloba RepID=Q1L6W2_GINBI 3.0e-16
• FL-Next: Isoform 2 of DNA-directed RNA polymerase D subunit 2b OS=Arabidopsis thaliana GN=NRPD2b 0.0
• Sma3: DNA-directed RNA polymerase 4.457e-06
Internal
sp_v3.0_unigene80919 SustainPine v3.0 157
• AutoFact: putative RNA polymerase III [Oryza sativa Japonica Group] 3.0e-13
• FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
• Sma3: DNA-directed RNA polymerase 6.195e-07
Internal
sp_v3.0_unigene94589 SustainPine v3.0 833
• AutoFact: putative bHLH transcription factor (bHLH062) [Arabidopsis thaliana] dbj|BAD44426.1| putative bHLH transcription factor (bHLH062) [Arabidopsis thaliana] 2.0e-23
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: BHLH transcription factor 3.213e-13
Putative Complete
sp_v3.0_unigene94809 SustainPine v3.0 818
• AutoFact: putative bHLH transcription factor [Arabidopsis thaliana] 2.0e-29
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: BHLH transcription factor 1.544e-20
Putative Complete

Go to Annotations List

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain