Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: Pumilio RNA-binding repeat

Term: IPR001313  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene37624 SustainPine v3.0 694
AutoFact: Nucleic acid binding NABP n=1 Tax=Medicago truncatula RepID=Q2HS37_MEDTR 6.0e-29
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Putative pumilio/Mpt5 family RNA-binding protein 1.464e-14
Complete
sp_v3.0_unigene37706 SustainPine v3.0 4559
AutoFact: Nucleic acid binding NABP [Medicago truncatula] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Putative pumilio/Mpt5 family RNA-binding protein 1.98e-14
Complete
sp_v3.0_unigene38240 SustainPine v3.0 1548
AutoFact: DUF659 domain containing protein 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Putative Complete
sp_v3.0_unigene38583 SustainPine v3.0 1581
AutoFact: DUF659 domain containing protein 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Putative Complete
sp_v3.0_unigene38602 SustainPine v3.0 2294
AutoFact: DUF659 multi-domain protein 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
N-terminus
sp_v3.0_unigene44174 SustainPine v3.0 1045
AutoFact: BZIP transcription factor n=2 Tax=Trifolium repens RepID=D3YBE4_TRIRP 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene44178 SustainPine v3.0 4414
AutoFact: putative pumilio domain-containing protein PPD1 [Oryza sativa Japonica Group] gb|EAZ14131.1| hypothetical protein OsJ_04054 [Oryza sativa Japonica Group] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Putative pumilio/Mpt5 family RNA-binding protein 1.33e-14
Complete
sp_v3.0_unigene48052 SustainPine v3.0 1059
AutoFact: DUF632 domain containing protein 1.99993e-41
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene49135 SustainPine v3.0 308
AutoFact: DUF632 domain containing protein 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene52067 SustainPine v3.0 150
AutoFact: Translational repressor Pumilio/PUF3 and related RNA-binding proteins (Puf superfamily) (ISS) [Ostreococcus tauri] emb|CAL57619.1| Translational repressor Pumilio/PUF3 and related RNA-binding proteins (Puf superfamily) (ISS) [Ostreococcus tauri] 1.0e-05
FL-Next: tr=Predicted protein; Micromonas pusilla (strain CCMP1545) (Picoplanktonic green alga). 0.0
Internal
sp_v3.0_unigene52565 SustainPine v3.0 227
AutoFact: DUF659 domain containing protein 1.0e-11
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Internal
sp_v3.0_unigene54885 SustainPine v3.0 334
AutoFact: DUF659 domain containing protein 9.80909e-45
FL-Next: tr=Putative uncharacterized protein; Medicago truncatula (Barrel medic) (Medicago tribuloides). 0.0
Internal
sp_v3.0_unigene55371 SustainPine v3.0 384
AutoFact: DUF659 domain containing protein 2.0e-31
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Putative C-terminus
sp_v3.0_unigene56903 SustainPine v3.0 346
AutoFact: DUF659 domain containing protein 5.60519e-45
FL-Next: tr=Putative uncharacterized protein; Medicago truncatula (Barrel medic) (Medicago tribuloides). 0.0
Sma3: HAT dimerisation domain-containing protein-like 4.034e-07
Internal
sp_v3.0_unigene59181 SustainPine v3.0 420
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
C-terminus
sp_v3.0_unigene59422 SustainPine v3.0 125
AutoFact: Unassigned protein
FL-Next: Isoform 2 of Pumilio homolog 5 OS=Arabidopsis thaliana GN=APUM5 0.0
Internal
sp_v3.0_unigene59554 SustainPine v3.0 286
AutoFact: DUF659 domain containing protein 9.0e-26
FL-Next: tr=Putative uncharacterized protein; Medicago truncatula (Barrel medic) (Medicago tribuloides). 0.0
Internal
sp_v3.0_unigene70916 SustainPine v3.0 309
AutoFact: Predicted protein n=2 Tax=Physcomitrella patens RepID=A9RY77_PHYPA 7.0e-14
FL-Next: sp=Pumilio homolog 1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Putative pumilio/Mpt5 family RNA-binding protein 1.79e-18
Internal
sp_v3.0_unigene93685 SustainPine v3.0 2236
AutoFact: putative pumilio domain-containing protein PPD1 [Oryza sativa Japonica Group] gb|EAZ14131.1| hypothetical protein OsJ_04054 [Oryza sativa Japonica Group] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Putative pumilio/Mpt5 family RNA-binding protein 2.944e-14
Complete
sp_v3.0_unigene97342 SustainPine v3.0 344
AutoFact: DUF659 domain containing protein 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
N-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain