Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: RNA polymerase II, large subunit, CTD

Term: IPR006569  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene49445 SustainPine v3.0 523
AutoFact: Glutathione peroxidase n=1 Tax=Picea sitchensis RepID=A9NS67_PICSI 1.0e-37
FL-Next: sp=Glutathione peroxidase; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Glutathione peroxidase 0.0
C-terminus
sp_v3.0_unigene52504 SustainPine v3.0 238
AutoFact: putative pre-mRNA cleavage complex II protein Pcf11 [Oryza sativa Japonica Group] dbj|BAD46240.1| putative KIAA protein [Oryza sativa Japonica Group] 1.0e-20
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Internal
sp_v3.0_unigene56507 SustainPine v3.0 313
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Internal
sp_v3.0_unigene57127 SustainPine v3.0 381
AutoFact: putative U2-associated SR140 protein [Oryza sativa Japonica Group] 0.0
FL-Next: sp=SURP and G-patch domain-containing protein 1-like protein; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene57728 SustainPine v3.0 162
AutoFact: Glutathione peroxidase (Fragment) n=1 Tax=Pinus sylvestris RepID=C7U2Y6_PINSY 2.0e-19
FL-Next: sp=Glutathione peroxidase; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Glutathione peroxidase 0.0
Internal
sp_v3.0_unigene60425 SustainPine v3.0 192
AutoFact: Glutathione peroxidase-like protein (Fragment) n=10 Tax=Picea sitchensis RepID=E0Z6W2_PICSI 4.0e-24
FL-Next: sp=Glutathione peroxidase; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Glutathione peroxidase 0.0
Putative C-terminus
sp_v3.0_unigene61022 SustainPine v3.0 239
AutoFact: Glutathione peroxidase n=1 Tax=Picea sitchensis RepID=A9NS67_PICSI 9.0e-31
FL-Next: sp=Glutathione peroxidase; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Glutathione peroxidase 0.0
Internal
sp_v3.0_unigene62158 SustainPine v3.0 248
AutoFact: putative U2-associated SR140 protein [Oryza sativa Japonica Group] 2.0e-12
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Internal
sp_v3.0_unigene64203 SustainPine v3.0 224
AutoFact: putative U2-associated SR140 protein [Oryza sativa Japonica Group] 3.0e-31
FL-Next: tr=Predicted protein; subsp. trichocarpa). 0.0
Internal
sp_v3.0_unigene66335 SustainPine v3.0 302
AutoFact: RecName: Full=Phospholipid hydroperoxide glutathione peroxidase, chloroplastic; Short=PHGPx; Flags: Precursor emb|CAA04142.1| phospholipid glutathione peroxidase [Pisum sativum] 2.0e-35
FL-Next: sp=Glutathione peroxidase; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Glutathione peroxidase 0.0
C-terminus
sp_v3.0_unigene69563 SustainPine v3.0 181
AutoFact: putative U2-associated SR140 protein [Oryza sativa Japonica Group] 5.0e-14
FL-Next: tr=Predicted protein; subsp. trichocarpa). 0.0
Internal
sp_v3.0_unigene73662 SustainPine v3.0 259
AutoFact: putative pre-mRNA cleavage complex II protein Pcf11 [Oryza sativa Japonica Group] dbj|BAD46240.1| putative KIAA protein [Oryza sativa Japonica Group] 9.0e-29
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Internal
sp_v3.0_unigene80312 SustainPine v3.0 118
AutoFact: putative pre-mRNA cleavage complex II protein Pcf11 [Oryza sativa Japonica Group] dbj|BAD46240.1| putative KIAA protein [Oryza sativa Japonica Group] 3.0e-10
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Internal
sp_v3.0_unigene82435 SustainPine v3.0 361
AutoFact: FAP multi-domain protein 2.0e-17
Sma3: Putative glycine-rich cell wall structural protein 6.895e-10
coding
sp_v3.0_unigene95622 SustainPine v3.0 592
AutoFact: plastocyanin-like domain-containing protein [Arabidopsis thaliana] gb|AAB95306.1| putative phytocyanin [Arabidopsis thaliana] gb|AEC07879.1| plastocyanin-like domain-containing protein [Arabidopsis thaliana] 6.0e-08
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Putative glycine-rich cell wall structural protein 1.958e-07
N-terminus
sp_v3.0_unigene96659 SustainPine v3.0 589
AutoFact: Tudor/PWWP/MBT domain-containing protein [Arabidopsis thaliana] gb|AAD31171.1| putative transcription factor [Arabidopsis thaliana] dbj|BAB11170.1| transcription factor-like protein [Arabidopsis thaliana] dbj|BAH30593.1| hypothetical protein [Arabidopsis 0.0
FL-Next: sp=ENHANCER OF AG-4 protein 2; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene96786 SustainPine v3.0 509
AutoFact: DUF618 domain containing protein 6.0e-21
FL-Next: tr=Putative uncharacterized protein; Ricinus communis (Castor bean). 0.0
N-terminus
sp_v3.0_unigene98298 SustainPine v3.0 249
AutoFact: FAP multi-domain protein 6.0e-17
Sma3: Glycine-rich protein 5.691e-11
coding
sp_v3.0_unigene99399 SustainPine v3.0 517
AutoFact: DUF618 domain containing protein 1.0e-09
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Internal
sp_v3.0_unigene102965 SustainPine v3.0 362
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain